SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24828

Length: 205 nt

UniGene Fasta

>biog3_v1.0_unigene24828
AATGTGTTCGTAGATTGCGTTTGGTGTCGCAAGGATTGGAAGTATCAGCGCAGGGGTTGGGTTGCATGGGCATGTCTGCCTTCTATGGCCCTCCAAAGCCCGACGAAGAAATGATATCTCTCATCCGCCATGCCGTCTCCAGAGGCATTACTTTTCTCGATACTTCGGACATCTATGGCCCCTTTACCAACGAAGTCCTCGTTGG

Ace file of the UniGene biog3_v1.0_unigene24828

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32568	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana] gb\|AAL08296.1\| At1g60710/F8A5_23 [Arabidopsis thaliana] gb\|AAM20506.1\| auxin-induced protein, putative [Arabidopsis thaliana] gb\|AAN15570.1\| auxin-induced protein, putative [Arabidopsis thal	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	auxin-induced protein pcnt115 isoform 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	87%
Blast2go	sucrose induced translational repression	GO:0080149	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	87%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMK3

Fln msg: Distance to subject end: 269 aas, atg_distance in limit (1-15): atg_distance = 9, W2: There is no M at the beginning, your sequence is shorter than subject: 67 - 345

Fln protein: CVRRLRLVSQGLEVSAQGLGCMGMSAFYGPPKPDEEMISLIRHAVSRGITFLDTSDIYGPFTNEVLV

Protein Length: 68

Fln nts: A_-_ATGTGTTCGTAGATTGCGTTTGGTGTCGCAAGGATTGGAAGTATCAGCGCAGGGGTTGGGTTGCATGGGCATGTCTGCCTTCTATGGCCCTCCAAAGCCCGACGAAGAAATGATATCTCTCATCCGCCATGCCGTCTCCAGAGGCATTACTTTTCTCGATACTTCGGACATCTATGGCCCCTTTACCAACGAAGTCCTCGTTGG

Fln Alignment:

biogeco3_mira_c26161___RRLRLVSQGLEVSAQGLGCMGMSAFYGPPKPDEEMISLIRHAVSRGITFLDTSDIYGPFTNEVLV
B8LMK3__________________RRLHLGSQGLEVSAQGLGCMGMSAFYGPPKPDQEMISLIHYAVSKGITFLDTSDIYGPFTNEVLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain