SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24814

Length: 761 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24814 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8084	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	sex determination protein tasselseed-2-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	78%
Blast2go	binding	GO:0005488	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
210	20		80		0.995493
214		80		20	0.995493
256	85			14	0.993533
257		85		14	0.993533
389	20	80			0.995493
391			80	20	0.995493
392	80		20		0.995493
393	80			20	0.995493
437	40		60		1.0
438	40		60		1.0
439			60	40	1.0
452	14	85			0.993533
453	14			85	0.993533
456	85			14	0.993533
489		12		87	0.992554
491	87			12	0.992554
492			87	12	0.992554
614		88		11	0.923564
663	20			80	0.995493
666		80		20	0.995493
667			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain