SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24812

Length: 459 nt

UniGene Fasta

>biog3_v1.0_unigene24812
AGTGTAACATTTAGCGCTAGTGGCTATATTCTGACATCTGAGATTGACTGTAATTTTCACGAATCTGTCCGCCTCGACAACTTTGATTTGTGTCGAACACTGACTCTGGTGCCCCCGGATGGAGAATTTCCAGTCATGAATTACCGCATGACTCAAGAGTTTAAGCCTCCATTTCATGTCAATACTTTGATTGAAGAAGCTGGTTCTTTAAAGGCAGAAGTTATGCTGAAAGTTCGTGCTGACTTTTCCTCTACAATTACTGCTAACACGGTTGCGTTGCATATGCCTCTGCCAAAATACACGACAAGGGTTAGCTTTGATTTGGAGGCAGGAGCAGTAGGACAAACAACAGATTTCAAGGAAGGGAATAAGACGCTAGAATGGGGGCTGAGAAAGATTGTTGGTGGTTCTGAGCATACATTACGGGCAAAGCTTTCATTTTCCCAAGAGACAATTATG

Ace file of the UniGene biog3_v1.0_unigene24812

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2447	5/9
SustainPine v2.0	sp_v2.0_unigene11032	4/9

Source	Descriptions	Term	Type	Identity
AutoFact	AP-4 complex subunit mu-1 [Arabidopsis thaliana] emb\|CAA23008.1\| clathrin coat assembly like protein [Arabidopsis thaliana] emb\|CAB79365.1\| clathrin coat assembly like protein [Arabidopsis thaliana] gb\|AAL59993.1\| putative clathrin coat assembly protein [	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	ap-4 complex subunit mu-1	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	86%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	86%
Blast2go	clathrin vesicle coat	GO:0030125	Cellular Component	86%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Clathrin adaptor, mu subunit	IPR001392	-	0.0	-
Sma3	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM66

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 153 - 451

Fln protein: SVTFSASGYILTSEIDCNFHESVRLDNFDLCRTLTLVPPDGEFPVMNYRMTQEFKPPFHVNTLIEEAGSLKAEVMLKVRADFSSTITANTVALHMPLPKYTTRVSFDLEAGAVGQTTDFKEGNKTLEWGLRKIVGGSEHTLRAKLSFSQETIM

Protein Length: 154

Fln nts: AGTGTAACATTTAGCGCTAGTGGCTATATTCTGACATCTGAGATTGACTGTAATTTTCACGAATCTGTCCGCCTCGACAACTTTGATTTGTGTCGAACACTGACTCTGGTGCCCCCGGATGGAGAATTTCCAGTCATGAATTACCGCATGACTCAAGAGTTTAAGCCTCCATTTCATGTCAATACTTTGATTGAAGAAGCTGGTTCTTTAAAGGCAGAAGTTATGCTGAAAGTTCGTGCTGACTTTTCCTCTACAATTACTGCTAACACGGTTGCGTTGCATATGCCTCTGCCAAAATACACGACAAGGGTTAGCTTTGATTTGGAGGCAGGAGCAGTAGGACAAACAACAGATTTCAAGGAAGGGAATAAGACGCTAGAATGGGGGCTGAGAAAGATTGTTGGTGGTTCTGAGCATACATTACGGGCAAAGCTTTCATTTTCCCAAGAGACAATTATG

Fln Alignment:

biogeco3_mira_c25912___SVTFSASGYILTSEID------------------------------------------------CNFHESVRLDNFDLCRTLTLVPPDGEFPVMNYRMTQEFKPPFHVNTLIEEAGSLKAEVMLKVRADFSSTITANTVALHMPLPKYTTRVSFDLEAGAVGQTTDFKEGNKTLEWGLRKIVGGSEHTLRAKLSFSQETIM
B8LM66__________________SVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLSIGRSGHSSYDYSSSSGAGMVILDDCNFHESVRLDNFDLDRTLTLVPPDGEFPVMNYRMTQEFKPPFRVNALIEEAGSLKAEVMLKVRADFSSSITANTVALQMPLPKYTTRVSFDLEPGAVGQTTDFKEGNKMLEWGLRKIVGGSEHTLRAKLTFSQETNM

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
315		83		16	0.994512
328			60	40	1.0
353		20	80		0.995493
403		50		50	1.0
441	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain