SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24811

Length: 1181 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24811 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21112	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to synaptotagmin binding, cytoplasmic RNA interacting protein, isoform 1 [Ornithorhynchus anatinus]	-	-	3.0e-31	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	heterogeneous nuclear ribonucleoprotein q	-	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	mRNA metabolic process	GO:0016071	Biological Process	58%
Blast2go	gene expression	GO:0010467	Biological Process	58%
Blast2go	binding	GO:0005488	Molecular Function	58%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	58%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	58%
Blast2go	nuclear part	GO:0044428	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Xklp2 targeting protein	IPR009675	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAK1

Fln msg: your sequence is longer than subject: 341 - 78

Fln protein: MPVGFVHFSERYELDKAIKELDDKTIEGPDKSPKFKIQVTVAKPADKAKKRSREESQKLTANKSDGQAKKSTDITSYKALGYPNMHAKVPRLDAKPIEVPTVADPYEVAVLSLPTSVTDRLLRIFRQGLATRYDIDIQCLTSLRELPEVTAAAILEQFATNNFADGRNKSAYLAGLIARYKVDSLASGRIPMLHQGQSSNLPSRDAGLLGITGTNNPSLLDPLVASHPLPGSALLRHGPYAAATSLGGLSQVPPLLTGDSLLERMPTRLDHSLSSYRAPASTGSNLGSGLPEASVTERRPPVKFDPFTGQPYKFDPFTGEPIQQPGPVSVPSSHFTGKYY*

Protein Length: 342

Fln nts: GAACCTTTTGGGAAGTTGGAGAGAGTTGCGATATCTAGAAAGAGTAAT_-_ATGCCTGTGGGGTTCGTCCACTTTAGCGAACGATATGAATTGGATAAGGCAATAAAAGAGCTGGATGACAAAACAATTGAGGGACCAGACAAAAGCCCAAAGTTTAAGATACAGGTCACAGTTGCAAAGCCTGCAGATAAGGCTAAGAAGCGTAGTCGTGAGGAATCCCAGAAGTTGACGGCTAATAAATCTGATGGTCAAGCAAAGAAATCCACAGATATTACATCTTACAAAGCACTGGGTTACCCCAATATGCATGCAAAAGTTCCCCGTCTTGATGCCAAGCCTATAGAGGTTCCAACTGTAGCAGATCCATACGAAGTGGCTGTCCTTTCATTGCCTACTTCTGTTACAGATCGTTTGCTCCGGATATTTCGCCAAGGTCTTGCTACTCGATATGATATTGACATTCAATGCCTTACAAGTTTGCGGGAGCTTCCTGAAGTGACAGCTGCAGCTATCCTTGAGCAGTTTGCAACAAACAACTTTGCAGATGGGCGCAACAAGAGTGCATACCTTGCTGGTTTGATTGCAAGGTATAAAGTGGACAGCTTAGCAAGTGGGAGAATCCCAATGCTACATCAAGGACAAAGTTCAAATCTGCCATCCAGAGATGCTGGGCTACTTGGGATAACCGGAACAAACAATCCCTCTTTACTAGATCCTCTAGTTGCATCTCATCCTCTCCCAGGATCAGCTTTACTTCGGCATGGTCCTTACGCTGCAGCTACATCATTGGGTGGCCTTTCACAAGTGCCACCACTATTGACTGGAGATTCTCTTTTGGAAAGGATGCCAACTAGGCTAGATCATAGTCTCTCATCTTATAGAGCTCCAGCAAGCACTGGTTCTAACCTGGGGTCTGGCCTACCAGAAGCAAGCGTTACAGAAAGGCGACCACCAGTAAAGTTTGATCCCTTCACTGGTCAACCTTACAAGTTTGATCCTTTCACTGGAGAGCCTATCCAGCAGCCAGGACCTGTATCTGTGCCGTCTTCCCATTTTACTGGGAAGTATTACTGA___AAAAATCAATGTTAGTGGAATAGATTTATGTTTCATTATATAAAGTGCCGATCGATTTGGTTCTTCACATCACTGCATCCCTTCTACATTGAATCACTAATACATACATT

Fln Alignment:

biogeco3_mira_c25907___MPTRLD--HSLSSYRAPASTGSNLGSGLPEASVTERRPPVKFDPFTGQPYKFDPFTGEPIQQPGPVSVPSSHFTGKYY
D5AAK1__________________MPTRLDDVHSLSSYRAPASNGFNLGSGLPEASVTERRPPIKFDPFTGQPFKFDPFTGEPIQQPGPVSLPSSHFTGKYY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
190	20			80	0.995493
191		80		20	0.995493
192	80		20		0.995493
193	80			20	0.995493
586	25			75	0.996478
587			75	25	0.996478
616			66	33	0.997464
617		66		33	0.997464
650	66			33	0.997464
806		20	80		0.995493
808	80			20	0.995493
809	80			20	0.995493
1000	33	66			0.997452
1001	33			66	0.997452
1003	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain