SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24808

Length: 814 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24808 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene283	8/10
SustainPine v2.0	sp_v2.0_unigene12632	2/10

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M28 family protein [Arabidopsis thaliana] gb\|AAP37682.1\| At5g19740 [Arabidopsis thaliana] gb\|AED92744.1\| Peptidase M28 family protein [Arabidopsis thaliana]	-	-	49%
FL-Next	sp=Probable glutamate carboxypeptidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	probable glutamate carboxypeptidase 2-like isoform 1	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	exopeptidase activity	GO:0008238	Molecular Function	0.0	67%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transferrin receptor-like, dimerisation domain	IPR007365	-	-
Sma3	Peptidase M28	IPR007484	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
474	25		75		0.996473
477	75			25	0.996473
579		25	75		0.996473
580	25		75		0.996473
620		66		33	0.997461
648	33			66	0.997453
649		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain