SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24805

Length: 817 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24805 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22754	1/10
SustainPine v2.0	sp_v2.0_unigene32756	4/10
SustainPine v2.0	sp_v2.0_unigene60465	5/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DnaJ protein n=1 Tax=Camellia sinensis RepID=Q2L989_CAMSI	-	-	3.0e-31	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	heat shock protein binding protein	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	65%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR015609	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
329		20	80		0.995493
331			80	20	0.995493
369	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain