SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24783

Length: 918 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24783 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5128	17/18

Source	Descriptions	Term	Type	Identity
AutoFact	Diaminopimelate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RH82_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	diaminopimelate decarboxylase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.1.1.2-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lysine biosynthetic process via diaminopimelate	GO:0009089	Biological Process	82%
Blast2go	diaminopimelate decarboxylase activity	GO:0008836	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	0.0	-
Sma3	Diaminopimelate decarboxylase, LysA	IPR002986	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
180	33		66		0.997464
183	66		33		0.997467
451		75		25	0.996473
497	60			40	1.0
499			80	20	0.995493
500		75	25		0.996473
520	20	80			0.995493
524	80			20	0.995493
548	20	80			0.995493
552			80	20	0.995493
624	66		33		0.997452
658	85			14	0.993533
674	66	33			1.0
717		20	80		0.995493
782	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain