SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24776

Length: 228 nt

UniGene Fasta

>biog3_v1.0_unigene24776
AATGTATTGAAAGAACAAATTGCAACTGTTACTGGGGTGCTTTCAGACCAGCAGCGACTTATTTGTCGGGGAAAGGTCTTAAAGGATGACCAGCTTTTATCAGCGTATCATGTCGAGGATGGACACACACTACATTTGGTGGTTCGACAGCTAGTGAAAGTGGTGTCAGCCAGGAAGAATTGCGATTGGCCAATTTCCCAGCTTCAGCAGGTGCAACTTCAGCTGGTG

Ace file of the UniGene biog3_v1.0_unigene24776

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32768	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	3.0e-10	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	protein	-	-	6.62352e-41	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK71

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 76 - 153

Fln protein: NVLKEQIATVTGVLSDQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQLVKVVSARKNCDWPISQLQQVQLQLV

Protein Length: 77

Fln nts: AATGTATTGAAAGAACAAATTGCAACTGTTACTGGGGTGCTTTCAGACCAGCAGCGACTTATTTGTCGGGGAAAGGTCTTAAAGGATGACCAGCTTTTATCAGCGTATCATGTCGAGGATGGACACACACTACATTTGGTGGTTCGACAGCTAGTGAAAGTGGTGTCAGCCAGGAAGAATTGCGATTGGCCAATTTCCCAGCTTCAGCAGGTGCAACTTCAGCTGGTG

Fln Alignment:

biogeco3_mira_c25528___LKEQIATVTGVLSDQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVR
B8LK71__________________IKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain