SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24771

Length: 295 nt

UniGene Fasta

>biog3_v1.0_unigene24771
CACATAATTGTTTCAATTGAGGGCGTGGCTTCACTTCAGCAACTCCAGCAGTTTTTGCAGAAACGTCTACGGAAACTTCCATTGGATGGTACAGTTTTGTATACCATCTCTGTGCGCATCAAGTTCCTCGACAGCTTTCTGCAGTTGCTCTTTCTTTGAATCCACTGTTTGCAACTGACCCAGCCCGCCTAGTTTTGAATGCTTTGGAGGGGTTTTACCCTATAAATGAACCATCCAATCAAGGGAACAAAAAGGAGACTGGTCTTCCGGCTCAACGCCGTACCTGTATTACATT

Ace file of the UniGene biog3_v1.0_unigene24771

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17032	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	ABI3-interacting protein 2 n=1 Tax=Callitropsis nootkatensis RepID=Q84NF6_9CONI	-	-	59%
FL-Next	tr=ABI3-interacting protein 2; Callitropsis nootkatensis.	-	-	70%
Blast2go	protein frigida-like	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Tektin	IPR000435	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Frigida-like	IPR012474	-	-
Sma3	Meiosis specific protein SPO22	IPR013940	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q84NF6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 370 aas, your sequence is shorter than subject: 97 - 672

Fln protein: HNCFN*GRGFTSATPAVFAETSTETSIGWYSFVYHLCAHQVPRQLSAVALSLNPLFATDPARLVLNALEGFYPINEPSNQGNKKETGLPAQRRTCIT

Protein Length: 98

Fln nts: CACATAATTGTTTCAATTGAGGGCGTGGCTTCACTTCAGCAACTCCAGCAGTTTTTGCAGAAACGTCTACGGAAACTTCCATTGGATGGTACAGTTTTGTATACCATCTCTGTGCGCATCAAGTTCCTCGACAGCTTTCTGCAGTTGCTCTTTCTTTGAATCCACTGTTTGCAACTGACCCAGCCCGCCTAGTTTTGAATGCTTTGGAGGGGTTTTACCCTATAAATGAACCATCCAATCAAGGGAACAAAAAGGAGACTGGTCTTCCGGCTCAACGCCGTACCTGTATTACATT

Fln Alignment:

biogeco3_mira_c25449___ATDPARLVLNALEGFYPINEPSNQGNKKETGLPAQRRTCI
Q84NF6__________________SVDPARLVLNALEGFY----PPNQGNKTEHGLAARRRSCI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain