SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24768

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene24768
AATGTAATCAAAGGTTGGACATGTCCTATTTCTGTAAGTATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGCTGCAGATCGTAAACAGTCATTTGATGCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGACATT

Ace file of the UniGene biog3_v1.0_unigene24768

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3105	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Oryza sativa Japonica Group]	-	-	76%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	90%
Blast2go	methylcrotonoyl- carboxylase beta mitochondrial-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylcrotonoyl-CoA carboxylase.	EC:6.4.1.4	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	85%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	85%
Blast2go	methylcrotonoyl-CoA carboxylase activity	GO:0004485	Molecular Function	85%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LDD8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 191 aas, your sequence is shorter than subject: 78 - 587

Fln protein: NVIKGWTCPISVSMRNLYMMQRSFVALCCRS*TVI*CRSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGH

Protein Length: 79

Fln nts: AATGTAATCAAAGGTTGGACATGTCCTATTTCTGTAAGTATGAGGAACCTTTATATGATGCAAAGGAGCTTCGTGGCATTGTGCTGCAGATCGTAAACAGTCATTTGATGCCGTTCTATAATTGCTCGCATAGTTGATGGAAGTGTATTTGATGAATTCAAGAAGCTATATGGCACAACTCTTGTTACAGGTTTTGCAAGAATCTATGGACAGCCTGTAGGCATAATTGGACATT

Fln Alignment:

biogeco3_mira_c25417___RSIIARIVDGSVFDEFKKLYGTTLVTGFARIYGQPVGIIGH
Q9LDD8__________________RSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain