SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24760

Length: 523 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24760
AAGTGGACACTTGGATTAGCTGGAGGCAAAGATAAGATTGCAATTATTAGGGCTTCAGGAAGCATTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAACAGGTGTTCCTGAAGATTATTAAGGATTATCTCAGCTCTTTCTGAAACCTGAAACTTGCATGTACATATAAAATGGCTTGTAAAGGTAGTTTGTCTTCTGTTAAAGTAAAGGTGATTATGTCCTATGAACTAAAGTCACCATTGTATAGAAACCCAATTCATTTGTGGAGCTAAACTTGTCACTTCAGACAATAGTTCAACTACATT

Ace file of the UniGene biog3_v1.0_unigene24760 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25778	1/3
SustainPine v2.0	sp_v2.0_unigene28638	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase n=1 Tax=Vitis vinifera RepID=UPI000198502A	-	-	66%
FL-Next	sp=DNA-directed RNA polymerase; Vitis vinifera (Grape).	-	-	81%
Blast2go	protease 4-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to light intensity	GO:0009642	Biological Process	80%
Blast2go	proteolysis	GO:0006508	Biological Process	80%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptidase S49	IPR002142	-	-
Sma3	Peptidase S49, protease IV	IPR004634	-	-
Sma3	Peptidase S49, SppA	IPR004635	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SIQ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 113 - 425

Fln protein: KWTLGLAGGKDKIAIIRASGSISRVSSRFNVSRSGIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVAASGGYYMAMATGVPEDY*

Protein Length: 114

Fln nts: AAGTGGACACTTGGATTAGCTGGAGGCAAAGATAAGATTGCAATTATTAGGGCTTCAGGAAGCATTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAACAGGTGTTCCTGAAGATTATTAAGGATTATCTCAGCTCTTTCTGAAACCTGAAACTTGCATGTACATATAAAATGGCTTGTAAAGGTAGTTTGTCTTCTGTTAAAGTAAAGGTGATTATGTCCTATGAACTAAAGTCACCATTGTATAGAAACCCAATTCATTTGTGGAGCTAAACTTGTCACTTCAGACAATAGTTCAACTACATT

Fln Alignment:

biogeco3_mira_c25288___KWTLGLAGGKDKXXXXXXXXXXXXXXXXXXXXXSGIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVAASGGYYMAMATG
D7SIQ7__________________KWTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQFIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain