SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24721

Length: 1076 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24721 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1551	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L18e/L15 [Arabidopsis thaliana] dbj\|BAB11434.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL91235.1\| unknown protein [Arabidopsis thaliana] gb\|AAM62464.1\| unknown [Arabidopsis thaliana] gb\|AAM91243.1\| unknown protein [Arabidopsi	-	-	71%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	76%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	83%
Blast2go	translation	GO:0006412	Biological Process	83%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	83%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15, conserved site	IPR001196	-	0.0	-
Sma3	Ribosomal protein L15, bacterial-type	IPR005749	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B9N3V7

Fln msg: Separated hits, possible frame ERROR between 576 and 578, W2: There is no M at the beginning, your sequence is longer than subject: 260 - 224

Fln protein: FSYPPAPNRVCNGPFTTTAATFTSGSALCSGAALNAVGGRRLLLLNDLRDNKGSRKKKTRKGRGIGSGKGKTAGRGHKGQKARGGHKLGFEGGQTPLRRLLPRRGFKNPFSLSFQPITLGKLARYINAGRIDSSELITMKTLKDVGAIGKQIEDGVKLLGGSGAKDIQWPIHVEVSRVTTPAKEAIEAAGGxxIRRVHYNRLGLRALLKPEWFEKKGRLLPRAARPPPKLRPKVDSIGRLPAPTKPIPFTSENKTESSA*

Protein Length: 261

Fln nts: TTTTCTTACCCTCCTGCTCCCAATAGAGTTTGTAATGGGCCATTCACGACAACAGCAGCGACATTTACCTCTGGATCAGCGTTGTGCAGTGGAGCAGCGCTAAATGCCGTAGGGGGCAGGAGGCTCCTGCTCTTAAATGATTTGCGGGACAACAAAGGGTCCAGAAAGAAGAAGACCCGCAAGGGCAGAGGAATTGGGTCTGGCAAGGGCAAAACAGCAGGTAGAGGGCACAAGGGTCAGAAGGCGAGAGGTGGTCATAAATTAGGATTCGAAGGTGGTCAGACCCCTCTGCGAAGATTATTGCCCCGCCGAGGGTTTAAGAATCCCTTCAGTCTTAGTTTCCAGCCTATTACCTTGGGGAAACTTGCAAGATATATAAATGCAGGTCGTATTGACTCTTCTGAACTGATTACAATGAAAACACTGAAGGATGTTGGAGCCATAGGAAAGCAGATTGAAGATGGTGTAAAACTGCTGGGGGGATCTGGGGCGAAGGACATCCAATGGCCCATTCATGTTGAGGTAAGCCGAGTTACGACACCAGCAAAAGAAGCAATTGAAGCTGCTGGAGGAAGxxxGATTAGGAGAGTTCATTACAATAGACTTGGCTTGCGAGCTCTTTTAAAGCCAGAATGGTTTGAAAAGAAGGGCCGTCTATTGCCACGAGCGGCACGCCCACCACCAAAGCTGCGACCTAAAGTTGACAGTATTGGTCGTCTACCTGCTCCAACCAAACCCATACCTTTTACAAGTGAAAACAAAACTGAATCGTCTGCTTAAACTAGTTAAAGTTTGAAATTGATTTTATTCCAGTAAGATTGGTTCGGAAAAGAATGTGATGGGTTTTGGAATCTGGATATTTTCAGTAATTTCTGTGGTTCGTAGAGAATCATTCTAGCTGGAAATCCTTGATACTAACTTCTCCGTTTTACCATTTTTTCTTTCTAGAAAGGTCCCTTGTCCTGTGGTACGCAAGGGGCACGCACTGTGAAGAGATCAAGGTTTAAATCTTGGGGACATCTTGCATTGCACCATTCTCCAAATGGTGCTATGAAATAAACAAATCTTAACTTGCACG

Fln Alignment:

biogeco3_mira_c24798___HKGQKARGGHKLGFEGGQTPLRRLLPRRGFKNPFSLSFQPITLGKLARYINAGRIDSSELITMKTLKDVGAIGKQIEDGVKLLGGSGAKDIQWPIHVEVSRVTTPAKEAIEAAGGSxIRRVHYNRLGLRALLKPEWFEKKGXXXXXXXXXXXXXXXKVDSIGRLPAPTKPIPFTSENKTESS
B9N3V7__________________HKGQKARGTMKFGFEGGQTPMRRRLPKRGFKNPFSLTFQPVGLGKIARLINAGKIDSHELITMKTLKETGAIGKQIKDGVRLM-GRGAEKIQWPIHLEVSRVTVRAKQAVEAAGGSxVRRVHYNQLGLRALLKPEWFEKKGRLLPKAARPPPKLRGKVDSIGRLPAPTKPIPFYTEEKEAAS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
813		83	16		0.994512
814		83		16	0.994512
951		75		25	0.996473
953	25		75		0.996473
954	25		75		0.996473
955	75			25	0.996473
956	25		75		0.996473
958	25	75			0.996473
960		75		25	0.996473
1040			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain