SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24708

Length: 933 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene24708

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15753	5/19
SustainPine v2.0	sp_v2.0_unigene15994	13/19
SustainPine v2.0	sp_v2.0_unigene60992	1/19

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1005 domain containing protein	-	-	57%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	59%
Blast2go	uncharacterized protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GNA8

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 310 - 445

Fln protein: HQSRHSFFKIPCFCEIKFDKFPVQIAAVPLISVDAPAPDVQNLVASFHLEHSELVKLSKNYSCLGVSNPQLDITVYTGRQGSNCGMNLGKVLGKFSVPLDLEGAHERLVVFHNGWVSIGKSSAGDSKAGPQLHLNVRAEPDPRFVFQFDGEPECSPQVLQIQGNIRQPIFSCKFSRDRNSRSRSIQCDSSNRGWLSSCSSSRERDIRVRKGWLVMIHDLSGSPVAAASMVTPFVPSVGTDRVSRSNPGAWLILRHIGEGSWTPWGRLEAWRERGGSDGLGCRFELVAEGCGLVGMNNGILLAESVISSQK

Protein Length: 311

Fln nts: CCCACCAGAGCAGGCATTCATTCTTCAAGATTCCTTGCTTTTGCGAGATCAAATTTGATAAATTCCCAGTCCAGATAGCGGCGGTTCCTCTCATTTCTGTCGACGCTCCTGCCCCTGATGTCCAAAACTTGGTGGCGAGTTTTCATCTGGAGCATTCGGAGCTAGTGAAGCTTTCCAAGAATTATTCTTGCCTCGGGGTTTCGAATCCGCAGCTGGACATTACGGTTTACACAGGCCGGCAGGGTTCGAACTGCGGTATGAACTTGGGAAAGGTCCTGGGTAAATTCTCGGTTCCTTTGGACTTGGAGGGAGCCCACGAGAGGCTGGTCGTGTTCCACAACGGGTGGGTGTCTATTGGGAAAAGCTCAGCCGGAGATTCGAAAGCGGGACCTCAGCTTCATTTGAACGTCCGGGCAGAGCCTGACCCAAGGTTTGTTTTCCAGTTTGACGGCGAGCCCGAGTGCAGTCCGCAGGTCTTGCAGATTCAGGGCAATATTCGGCAACCAATTTTTAGCTGCAAGTTTAGCCGCGACAGGAATTCTAGATCACGATCGATCCAATGTGACTCAAGTAATAGGGGCTGGTTAAGCTCCTGCAGTAGTAGTCGGGAGAGAGATATAAGGGTACGGAAAGGATGGTTGGTTATGATACATGATCTTTCTGGGTCTCCAGTTGCAGCTGCATCAATGGTAACTCCTTTTGTTCCTTCAGTTGGTACAGATAGGGTTAGCCGCTCTAACCCTGGAGCTTGGCTTATTCTTAGACATATAGGAGAAGGCAGTTGGACGCCATGGGGTCGACTGGAAGCTTGGAGAGAACGCGGCGGTAGTGACGGTTTGGGCTGCAGATTTGAGCTTGTGGCAGAGGGCTGTGGATTGGTTGGCATGAATAATGGGATATTGCTTGCAGAATCAGTGATCAGTTCCCAAAAGG

Fln Alignment:

biogeco3_mira_c24697___PCFCEIKFDKFPVQIAAVPLISVDA---PAPDVQNLVASFHLEHSELVKLSKNYSCLGVSNPQLDITVYTGRQGSNCGMNLGKVLGKFSVPLDLEGAHERLVVFHNGWVSIGKSSAGDSKAGPQLHLNVRAEPDPRFVFQFDGEPECSPQVLQIQGNIRQPIFSCKFSR-----DRNSRSRSIQCD-SSNRGWLSSCSSSRERDIRVRKGWLVMIHDLSGSPVAAASMVTPFVPSVGTDRVSRSNPGAWLILRHIGEGSWTPWGRLEAWRERGGSDGLGCRFELVAEGCGLVGMNNGILLAESVISSQK
B9GNA8__________________PCFCKIKLKNFPLQTAVIPYTPPDNTQFPEGQHQTLAATFHLCKSDLDRLVTK--SIFTNKLHVKISIYTGRRGNTCGVNSGRLLGKVSVPLDLAGTESRGVVFHNGWISVGKECVKGSSA--QFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFTCKFSLRTTTGDRSQRSRSLQGEPNSSRSWLSSFGSERERPLKERKGWSITIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGSWLILRP-GDGTWKPWGRLEAWRERGSSDGLGYRFELIPDTKGSMSAAS-IVLAESTLSSHK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
214	16			83	0.994512
215	16		83		0.994512
216			83	16	0.994512
217	83		16		0.994512
218		83		16	0.994512
223		83	16		0.994512
275		83	16		0.994512
278	16		83		0.994512
279		16	83		0.994512
280	16		83		0.994512
282	83			16	0.994512
291	20		80		0.995493
318	20	80			0.995493
392		75		25	0.996473
402		25		75	0.996474
489	33		66		0.997471
490			66	33	0.997461
493	66			33	0.997458
555	25		75		0.996473
558		75	25		0.996473
559		75		25	0.996473
573	25			75	0.996473
585			66	33	0.997453
590			75	25	0.996473
591		75	25		0.996473
636	20		80		0.995493
680	16	83			0.994512
701	14	85			0.993533
702	14			85	0.993533
704			14	85	0.993533
797	90			10	0.90298
913	28		71		1.0
916			71	28	1.0
917	71			28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain