SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24697

Length: 676 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24697 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16196	2/10
SustainPine v2.0	sp_v2.0_unigene16275	8/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	universal stress protein (USP) family protein [Arabidopsis thaliana] gb\|AAO42062.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50593.1\| unknown protein [Arabidopsis thaliana] gb\|AEE79782.1\| universal stress protein (USP) family protein [Arabidopsis thal	-	-	1.0e-20	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	universal stress protein a-like protein	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
441	25	75			0.996473
443			75	25	0.996473
445	75			25	0.996473
451		50	50		1.0
460	50		50		1.0
478			50	50	1.0
488	75		25		0.996474
499		50		50	1.0
505	50		50		1.0
506	50		50		1.0
520		50		50	1.0
528			50	50	1.0
532		25		75	0.996473
533		25		75	0.996473
534		25		75	0.996473
556		33		66	0.997452
568	66		33		0.997452
570		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain