SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24694

Length: 595 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene24694

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18416	12/14
SustainPine v2.0	sp_v2.0_unigene79496	1/14

Source	Descriptions	Term	Type	Identity
AutoFact	Tetraspanin family protein [Arabidopsis thaliana] dbj\|BAB08914.1\| senescence-associated protein 5-like protein [Arabidopsis thaliana] gb\|AAV85676.1\| At5g46700 [Arabidopsis thaliana] dbj\|BAE98437.1\| senescence-associated protein 5-like protein [Arabidopsis	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	tetraspanin family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	meristem structural organization	GO:0009933	Biological Process	78%
Blast2go	root morphogenesis	GO:0010015	Biological Process	78%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	78%
Blast2go	radial pattern formation	GO:0009956	Biological Process	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Tetraspanin, subgroup	IPR000301	-	-
Sma3	Tetraspanin	IPR018499	-	-
Sma3	Tetraspanin, conserved site	IPR018503	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
166	20			80	0.995493
168			80	20	0.995493
169		80	20		0.995493
170	80			20	0.995493
177		40		60	1.0
178		20		80	0.995493
197		40		60	1.0
214	16	83			0.994512
215		83		16	0.994512
216	83		16		0.994512
217		83		16	0.994512
222		83		16	0.994512
232	83	16			0.994512
254		40		60	1.0
305	40		40	20	1.0
321	40		60		1.0
388		50		50	1.0
410			50	50	1.0
425	20	80			0.995493
429			80	20	0.995493
446	20	80			0.995493
447	80			20	0.995493
449	80			20	0.995493
471	20		80		0.995493
475	80			20	0.995493
493	16		83		0.994512
494	16	83			0.994512
495		83		16	0.994512
496	83		16		0.994512
497		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain