SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24676

Length: 444 nt

UniGene Fasta

>biog3_v1.0_unigene24676
AATGTCATTTCTCCACTGTCTTGGTCTTGCCTGGGATACCCAAAACAATAGATATGTGGCATTGAAGGTACAGAAGAGTGCACAGCATTACACAGAGGCAGCCATGGATGAGATTGCAATGTGAAGCAAATAGCAGAAGGGGATGTAGATGACGAGAAGTGTGTGGTTAAATTGCTGGATCATTTCAAGCACACTGGACCGAATGGGCAGCACGTGTGTATGGTTTTTGAGTTCTTAGGAGACAATTTGTTGACTCTTATCAAGTATTATGACTACAGGGGCATGCCCCTGCACATGGTGAAGGAAATTTGCTTTTCTGTATTGGTAGGATTGGACTACTTGCACCGGCAGCTTTCTATTATTCACACGGATCTCAAGCCTGAGAACATTCTCCTCTTGTCTACAATTGACCCTGCCAAAGATCCTAGGAAATCTGGTACTTCG

Ace file of the UniGene biog3_v1.0_unigene24676

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4403	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine/arginine (SR) protein kinase protein [Ipomoea trifida] dbj\|BAF36332.1\| hypothetical protein [Ipomoea trifida]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	serine threonine protein kinase srpk1	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 188 aas, your sequence is shorter than subject: 41 - 459

Fln protein: MSFLHCLGLAWDTQNNRYVALKVQKSAQHYTEAAMDEIAM*

Protein Length: 42

Fln nts: AATGTCATTTCTCCACTGTCTTGGTCTTGCCTGGGATACCCAAAACAATAGATATGTGGCATTGAAGGTACAGAAGAGTGCACAGCATTACACAGAGGCAGCCATGGATGAGATTGCAATGTGAAGCAAATAGCAGAAGGGGATGTAGATGACGAGAAGTGTGTGGTTAAATTGCTGGATCATTTCAAGCACACTGGACCGAATGGGCAGCACGTGTGTATGGTTTTTGAGTTCTTAGGAGACAATTTGTTGACTCTTATCAAGTATTATGACTACAGGGGCATGCCCCTGCACATGGTGAAGGAAATTTGCTTTTCTGTATTGGTAGGATTGGACTACTTGCACCGGCAGCTTTCTATTATTCACACGGATCTCAAGCCTGAGAACATTCTCCTCTTGTCTACAATTGACCCTGCCAAAGATCCTAGGAAATCTGGTACTTCG

Fln Alignment:

biogeco3_mira_c24438___WDTQNNRYVALKVQKSAQHYTEAAMDEI
B8LL66__________________WDRETREFVAVKIVRGLQRYREAAMIEI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain