SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24671

Length: 305 nt

UniGene Fasta

>biog3_v1.0_unigene24671
AATGTGTGTTTATTTGCAATGTAAACTTTCAGCATAGGGCTGAACATGCCTGCAAAGACAGTTGTGTTTACAAATGTCCGGAAATTTGATGGTGACAAGTTCCGTTGGATAACTAGTGGAGAGTATATTCAGATGAGTGGACGTGCTGGAAGGCGAGGTCTTGATGCACGTGGCATCTGTTTTTTGATGGTTGATGAAAAGATGGAGCCATCCACAGCAAAATTGATGGTTAAAGGAAGAGCTGATCCTTTGAATAGTGCTTTCCATCTGAGCTACAATATGCTATTGAATCAGATGCGTTGCGA

Ace file of the UniGene biog3_v1.0_unigene24671

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4393	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	superkiller viralicidic activity 2-like 2-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	85%
Blast2go	mRNA processing	GO:0006397	Biological Process	85%
Blast2go	maturation of 5.8S rRNA	GO:0000460	Biological Process	85%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	85%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	catalytic step 2 spliceosome	GO:0071013	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Peptidoglycan binding-like	IPR002477	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR012287	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: Distance to subject end: 478 aas, your sequence is shorter than subject: 101 - 884

Fln protein: NVCLFAM*TFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGLDARGICFLMVDEKMEPSTAKLMVKGRADPLNSAFHLSYNMLLNQMRC

Protein Length: 102

Fln nts: AATGTGTGTTTATTTGCAATGTAAACTTTCAGCATAGGGCTGAACATGCCTGCAAAGACAGTTGTGTTTACAAATGTCCGGAAATTTGATGGTGACAAGTTCCGTTGGATAACTAGTGGAGAGTATATTCAGATGAGTGGACGTGCTGGAAGGCGAGGTCTTGATGCACGTGGCATCTGTTTTTTGATGGTTGATGAAAAGATGGAGCCATCCACAGCAAAATTGATGGTTAAAGGAAGAGCTGATCCTTTGAATAGTGCTTTCCATCTGAGCTACAATATGCTATTGAATCAGATGCGTTGCGA

Fln Alignment:

biogeco3_mira_c24432___CLFAM*TFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSXXXXXXXXXXXXICFLMVDEKMEPSTAKLMVKGRADPLNSAFHLSYNMLLNQMRC
B8LMT3__________________CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGLDARGICILMVDEKMEPSTAKLMVKGSADPLNSAFHLSYNMLLNQMRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain