SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24644

Length: 396 nt

UniGene Fasta

>biog3_v1.0_unigene24644
AATGTCAGTTGATACAGTATCTTGCAGACACGGGGTTTGCCAACAAAGGTTCCTTGGTATGCACACAACCCCGGAAAGTTGCTGCAATGTCTCTACAACAAAGAGTTGCGGGAGAATGCAAAGGATGCTATGGAGGCATGTCGTCTGTTGATTGTTGCACTACATACACTCCCAGGGAGCGTTCATTAGCTAAGGTTAACTATATGACTGACCATGTACTCCTTCAACTATGTATGTCAGACTCAGACTTGGCAAATATCAGCTGTATCATAGTGGATGAAGCTCATGAGCGTAGCTTAAGTACTGACCTTCTTCTAGCATTGCTTAAAAGATGCTTGTTCAGGAGACCAGAATTGAGGCTTATGATAATGTCTGCAACAGCAGATGCACATGCAT

Ace file of the UniGene biog3_v1.0_unigene24644

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58169	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp\|P0CE10.1\|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb\|AEE81967.1\| zinc finger-related and helicase and	-	-	1.0e-27	51%
FL-Next	sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	uncharacterized protein chloroplastic-like	-	-	1.00971e-33	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.00971e-33	73%

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0CE10

Fln msg: Distance to subject end: 1324 aas, your sequence is shorter than subject: 131 - 1787

Fln protein: CQLIQYLADTGFANKGSLVCTQPRKVAAMSLQQRVAGECKGCYGGMSSVDCCTTYTPRERSLAKVNYMTDHVLLQLCMSDSDLANISCIIVDEAHERSLSTDLLLALLKRCLFRRPELRLMIMSATADAHA

Protein Length: 132

Fln nts: AATGTCAGTTGATACAGTATCTTGCAGACACGGGGTTTGCCAACAAAGGTTCCTTGGTATGCACACAACCCCGGAAAGTTGCTGCAATGTCTCTACAACAAAGAGTTGCGGGAGAATGCAAAGGATGCTATGGAGGCATGTCGTCTGTTGATTGTTGCACTACATACACTCCCAGGGAGCGTTCATTAGCTAAGGTTAACTATATGACTGACCATGTACTCCTTCAACTATGTATGTCAGACTCAGACTTGGCAAATATCAGCTGTATCATAGTGGATGAAGCTCATGAGCGTAGCTTAAGTACTGACCTTCTTCTAGCATTGCTTAAAAGATGCTTGTTCAGGAGACCAGAATTGAGGCTTATGATAATGTCTGCAACAGCAGATGCACATGCAT

Fln Alignment:

biogeco3_mira_c24386___QLIQYLADTGFANKGSLVCTQPRKVAAMSLQQRVAGECKGCYGGMSSVDCCTTYTPRERSLAKVNYMTDHVLLQLCMSDSDLANISCIIVDEAHERSLSTDXXXXXXXXXXXXXPELRLMIMSATADAH
P0CE10__________________QLVQFLADSGVAASESIVCTQPRKIAAMTLTDRVREESSGCYEE-NTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain