SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24608

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24608
GGCTGATCAAACTACAGACATCGATTCATCTTCAGAAGAGCCATCTTTTGTTAGGGCTGAGCTTCATTCTGTCCTTCAGACTCCACCTTCTGAGCTACTCGAAAGCCATCTTACTGCAGATAATCGGGTCCGATATCTGCTTGCATGGTCATTATTTTTGACTCGTCTCCAAGCAGTGCCTTCTCTATCGGCTGCAAGGGAACGCATGGTACAATATATACAAGATTTTGGCAGTCCTTCAACATTATTGGATTTCCTTTTTCAGCATATACCATTAAAGCAAAGCTCATCACCTGGGTTAAAGAAGAAAGGTAATGCAGCTGTAATTGAAGCAACCAATGCTGCAACTGCAGCAAGACAATCAGCTGCAACAAACTCATTATCTTTCGCTGTGGAGGCATTATGGCCAATAGGGATAGAGGAAATGGCTACACTTGCTGGTGCAGTTTATGACATT

Ace file of the UniGene biog3_v1.0_unigene24608 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4359	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FANCL_C multi-domain protein	-	-	3.0e-06	33%
FL-Next	sp=E3 ubiquitin-protein ligase listerin; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FGI1

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 152 - 1873

Fln protein: ADQTTDIDSSSEEPSFVRAELHSVLQTPPSELLESHLTADNRVRYLLAWSLFLTRLQAVPSLSAARERMVQYIQDFGSPSTLLDFLFQHIPLKQSSSPGLKKKGNAAVIEATNAATAARQSAATNSLSFAVEALWPIGIEEMATLAGAVYDI

Protein Length: 153

Fln nts: GGCTGATCAAACTACAGACATCGATTCATCTTCAGAAGAGCCATCTTTTGTTAGGGCTGAGCTTCATTCTGTCCTTCAGACTCCACCTTCTGAGCTACTCGAAAGCCATCTTACTGCAGATAATCGGGTCCGATATCTGCTTGCATGGTCATTATTTTTGACTCGTCTCCAAGCAGTGCCTTCTCTATCGGCTGCAAGGGAACGCATGGTACAATATATACAAGATTTTGGCAGTCCTTCAACATTATTGGATTTCCTTTTTCAGCATATACCATTAAAGCAAAGCTCATCACCTGGGTTAAAGAAGAAAGGTAATGCAGCTGTAATTGAAGCAACCAATGCTGCAACTGCAGCAAGACAATCAGCTGCAACAAACTCATTATCTTTCGCTGTGGAGGCATTATGGCCAATAGGGATAGAGGAAATGGCTACACTTGCTGGTGCAGTTTATGACATT

Fln Alignment:

biogeco3_mira_c24334___DQTTDIDSS-----SEEPSFVRAELHSVLQTPPSELLESHLTADNRVRYLLAWSLFLTRLQAVPSLSAARERMVQYIQDFGSPSTLLDFLFQHIPLKQSSSPGLKKKGXXXXXXXXXXXXXXXXXXXXNSLSFAVEALWPIGIEEMATLAGAVYDI
Q9FGI1__________________ESLNDQDSSNAGLPSEDKLLLRDEVSCMVEKLDHELLDTDLTAPERVQTFLAWSLLLSNVNSLPSLTQGRERLVQYIEKTANP-LILDSLFQHIPLELYMGQSLKKKDGDIPSELSVVASAATRAIITGSSLSTVESLWPIETGKMASLAGAIYGL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
311		66		33	0.997452
338		33		66	0.997464
339	33	66			0.997464
341			66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain