SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24598

Length: 613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24598 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4735	5/7
SustainPine v2.0	sp_v2.0_unigene51256	2/7

Source	Descriptions	Term	Type	Identity
AutoFact	prephenate dehydratase [Ipomoea trifida] dbj\|BAF37790.1\| hypothetical protein [Ipomoea trifida]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	pdr1	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Prephenate dehydratase.	EC:4.2.1.51	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	71%
Blast2go	Biosynthesis of phenylpropanoids	01061	71%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	71%
Blast2go	Metabolic pathways	01100	71%
Blast2go	Biosynthesis of secondary metabolites	01110	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	0.0	71%
Blast2go	prephenate dehydratase activity	GO:0004664	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
459	33		66		0.997476
460	33	66			0.997476
469			33	66	0.997452
512	33	66			0.997452
516		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain