SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24574

Length: 362 nt

UniGene Fasta

>biog3_v1.0_unigene24574
AATGTAAACTGATGTAGGACAGCCAAAGGAGTTCCTTCAGCAGCCAGAAAAGCGATTAGACCAACTCAAGATCAGAATGGGATCTTTCACGGGAAACACAGAATATATAGCGAGGAGGTTCTTCAGAGGCAGCCATCCGAATTTGATTTGGGAACCAGTACAAAGTTACATACTGGAAAGTCATTGTTCACACTTTCTTGGGGAAATGCTGATAAAAGTACACGGCATAAGCATGATGTGGTCTCGTTCGAAAGTGGCAACATTACCACTGCAGTTCGCAGCAGTAAGCAGATAACTTTGAAGTGGGATTCACTTCCACAATCTGTGATCATCTTAACGAAGCCCAACTCCACTTCAGTAAG

Ace file of the UniGene biog3_v1.0_unigene24574

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27545	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(P)/ATP NAD kinase, putative n=1 Tax=Ricinus communis RepID=B9RIE7_RICCO	-	-	63%
FL-Next	sp=Probable NAD kinase 1; Oryza sativa subsp. japonica (Rice).	-	-	55%
Blast2go	nad kinase 1	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH kinase.	EC:2.7.1.86	-	0.0	75%
Blast2go	NAD(+) kinase.	EC:2.7.1.23	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		0.0	75%
Blast2go	Metabolic pathways	01100		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	NADH kinase activity	GO:0042736	Molecular Function	75%
Blast2go	NAD+ kinase activity	GO:0003951	Molecular Function	75%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Inorganic polyphosphate/ATP-NAD kinase, predicted	IPR002504	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	ATP-NAD kinase, PpnK-type, all-beta	IPR017437	-	-
Sma3	ATP-NAD kinase, PpnK-type, alpha/beta	IPR017438	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5JK52

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 298 aas, your sequence is shorter than subject: 120 - 532

Fln protein: NVN*CRTAKGVPSAARKAIRPTQDQNGIFHGKHRIYSEEVLQRQPSEFDLGTSTKLHTGKSLFTLSWGNADKSTRHKHDVVSFESGNITTAVRSSKQITLKWDSLPQSVIILTKPNSTSV

Protein Length: 121

Fln nts: AATGTAAACTGATGTAGGACAGCCAAAGGAGTTCCTTCAGCAGCCAGAAAAGCGATTAGACCAACTCAAGATCAGAATGGGATCTTTCACGGGAAACACAGAATATATAGCGAGGAGGTTCTTCAGAGGCAGCCATCCGAATTTGATTTGGGAACCAGTACAAAGTTACATACTGGAAAGTCATTGTTCACACTTTCTTGGGGAAATGCTGATAAAAGTACACGGCATAAGCATGATGTGGTCTCGTTCGAAAGTGGCAACATTACCACTGCAGTTCGCAGCAGTAAGCAGATAACTTTGAAGTGGGATTCACTTCCACAATCTGTGATCATCTTAACGAAGCCCAACTCCACTTCAGTAAG

Fln Alignment:

biogeco3_mira_c24288___PTQDQNGIFHGKHRIYSEEVLQRQPSEFDLGTSTKLHTGKSLFTLSWG-NADKSTRHKHDVVSFESGNITTAVRSSKQITLKWDSLPQSVIILTKPNSTSV
Q5JK52__________________PASDQAGCC-GNHGICSHEVLQDESPGPNPRSSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTVLFITKPNSNSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain