SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24561

Length: 320 nt

UniGene Fasta

>biog3_v1.0_unigene24561
GGACCAAGATATATCAGGAGATGCACTAGAAGAATTCAGAAGTGAGGTGCGAATTATGAAAAGGCTTCGCTGTCCCAATGTTGTTCTCTTCATGGGTGCAGTTACTAGAGCACCAAATCTTTCGATTGTGACTGAGTTTCTTCCAAGAGGGAGTTTGTATAGACTGATTCATCGCCCGAACAACCAGTTAGATGAAAGGAAGCGGCTGAGAATGGCACTAGATGTGGCAAGAGGAATGAACTATTTGCACAACAGTACACCGGTGATTGACATCGTGACTTGAAATCTCCAAATCTTCTAGTGGATAAGAATTGGGTTGT

Ace file of the UniGene biog3_v1.0_unigene24561

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28628	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	protein kinase	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3		IPR015783	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 136 aas, your sequence is shorter than subject: 94 - 319

Fln protein: DQDISGDALEEFRSEVRIMKRLRCPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDVARGMNYLHNSTPVIDIVT*

Protein Length: 95

Fln nts: GGACCAAGATATATCAGGAGATGCACTAGAAGAATTCAGAAGTGAGGTGCGAATTATGAAAAGGCTTCGCTGTCCCAATGTTGTTCTCTTCATGGGTGCAGTTACTAGAGCACCAAATCTTTCGATTGTGACTGAGTTTCTTCCAAGAGGGAGTTTGTATAGACTGATTCATCGCCCGAACAACCAGTTAGATGAAAGGAAGCGGCTGAGAATGGCACTAGATGTGGCAAGAGGAATGAACTATTTGCACAACAGTACACCGGTGATTGACATCGTGACTTGAAATCTCCAAATCTTCTAGTGGATAAGAATTGGGTTGT

Fln Alignment:

biogeco3_mira_c24264___DQDISGDALEEFRSEVRIMKRLRCPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQ--LDERKRLRMALDVARGMNYLHNSTPVI
D5A8V0__________________EQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain