SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24557

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene24557
AATGTCACAAGTATCGTCTTTCCAAAGTGCGCGTGGCACCGTCAGAAACTGCTCTCACAGATGTACTAAGAGAGGTTTCAATCATGAAAAAATTGGACCACCCCAATATTGTCAATTTAATCGAGGTGATTGATGATCTGGATACTGATCAATTTTACATGGTCCTAGAATATGTTGAAGGAAGAGGGATTTTTCAAGGTTCTGGACCAGCTGGAGG

Ace file of the UniGene biog3_v1.0_unigene24557

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8437	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	geminivirus rep interacting kinase 2 [Arabidopsis thaliana] gb\|AAW38987.1\| At5g60550 [Arabidopsis thaliana] gb\|ABG25065.1\| At5g60550 [Arabidopsis thaliana] emb\|CAM32014.1\| SnRK1-activating protein kinase-1 [Arabidopsis thaliana] gb\|AED97343.1\| geminivirus	-	-	68%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	75%
Blast2go	probable serine threonine-protein kinase ddb_g0279405-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HQA2

Fln msg: Distance to subject end: 203 aas, your sequence is shorter than subject: 71 - 435

Fln protein: CHKYRLSKVRVAPSETALTDVLREVSIMKKLDHPNIVNLIEVIDDLDTDQFYMVLEYVEGRGIFQGSGPAG

Protein Length: 72

Fln nts: AATGTCACAAGTATCGTCTTTCCAAAGTGCGCGTGGCACCGTCAGAAACTGCTCTCACAGATGTACTAAGAGAGGTTTCAATCATGAAAAAATTGGACCACCCCAATATTGTCAATTTAATCGAGGTGATTGATGATCTGGATACTGATCAATTTTACATGGTCCTAGAATATGTTGAAGGAAGAGGGATTTTTCAAGGTTCTGGACCAGCTGGAGG

Fln Alignment:

biogeco3_mira_c24259___HKYRLSKVRVAPSETALTDVLREVSIMKKLDHPNIVNLIEVIDDLDTDQFYMVLEYVEGRGIFQGSGPAG
B9HQA2__________________HKSHLLKLRVAPSETAMTDVLREVQIMKMLDHPNIVNLIEVIDDPNTDHFYMVLEYVDGKWVWEGSGPPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain