SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24556

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene24556
TTAAGTTTGTTGTTCCCTCTGGTCCCTTTGGCTATTCTAGCTGACAGGCTTCGACTAGGAAATGTTTGGGTGTTCCTCATAAGTTTGCTTGGCCTTGTCCTCTTGCTGAGCGTCTAGGCTTTATCACCGAACAAATTGCATTCTACACCGGACCAACAGTTGGTGGACTGCTCAATGCCACGTGCGGCAATGCAACAGAGATGCTCATTGCAGTGTTTGCACTTTACCATGGCAAGACC

Ace file of the UniGene biog3_v1.0_unigene24556

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene393	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ca2+ antiporter/cation exchanger n=2 Tax=Populus trichocarpa RepID=B9IG90_POPTR	-	-	53%
FL-Next	sp=Vacuolar cation/proton exchanger 1a; Oryza sativa subsp. japonica (Rice).	-	-	56%
Blast2go	ca2+ antiporter cation exchanger	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	77%
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	cation transmembrane transporter activity	GO:0008324	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Calcium/proton exchanger	IPR004713	-	-
Sma3	Calcium/proton exchanger superfamily	IPR004798	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q769E5

Fln msg: Separated hits, possible frame ERROR between 69 and 99, Distance to subject end: 306 aas, your sequence is shorter than subject: 80 - 451

Fln protein: LSLLFPLVPLAILADRLRLGNVxxxxxxxxxxxPLAERLGFITEQIAFYTGPTVGGLLNATCGNATEMLIAVFALYHGKT

Protein Length: 81

Fln nts: TTAAGTTTGTTGTTCCCTCTGGTCCCTTTGGCTATTCTAGCTGACAGGCTTCGACTAGGAAATGTTTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCTCTTGCTGAGCGTCTAGGCTTTATCACCGAACAAATTGCATTCTACACCGGACCAACAGTTGGTGGACTGCTCAATGCCACGTGCGGCAATGCAACAGAGATGCTCATTGCAGTGTTTGCACTTTACCATGGCAAGACC

Fln Alignment:

biogeco3_mira_c24258___LSLLFPLVPLAILADRLRLGNVWxxxxxxxxxxPLAERLGFITEQIAFYTGPTVGGLLNATCGNATEMLIAVFALYHGK
Q769E5__________________LAVLFPAVPLAIAAQCFRFDQVWxxxxxxxxxxPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain