SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24551

Length: 264 nt

UniGene Fasta

>biog3_v1.0_unigene24551
TATTTAAGCGATGTCAAGTATGTTTTGCAAATACGAGACTTGCAATCGTGGAAATTTGCTTGTTAATTTGCCAATAGATATTGGGTCAGTTTCTGGAATATCAGGAAGGCGTAAAGACAAGGAGATATTTATTGGGTTTACAAGCTTTCTTACCCCTGGCATTATCTATCGATGCAATCTATATGTGGAAAAACCAGAATTAGTGGTTTTCAGAGAGACTGTTGTTCCAGGCTTTGATCGGACAGAGTTTGAGGCTAAACAGGT

Ace file of the UniGene biog3_v1.0_unigene24551

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28509	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative prolyl endopeptidase [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	68%
Blast2go	prolyl oligopeptidase-like protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GQ49

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 270 aas, your sequence is shorter than subject: 87 - 376

Fln protein: I*AMSSMFCKYETCNRGNLLVNLPIDIGSVSGISGRRKDKEIFIGFTSFLTPGIIYRCNLYVEKPELVVFRETVVPGFDRTEFEAKQ

Protein Length: 88

Fln nts: TATTTAAGCGATGTCAAGTATGTTTTGCAAATACGAGACTTGCAATCGTGGAAATTTGCTTGTTAATTTGCCAATAGATATTGGGTCAGTTTCTGGAATATCAGGAAGGCGTAAAGACAAGGAGATATTTATTGGGTTTACAAGCTTTCTTACCCCTGGCATTATCTATCGATGCAATCTATATGTGGAAAAACCAGAATTAGTGGTTTTCAGAGAGACTGTTGTTCCAGGCTTTGATCGGACAGAGTTTGAGGCTAAACAGGT

Fln Alignment:

biogeco3_mira_c24251___NRGNLLVNLPIDIGSVSGISGRRKDKEIFIGFTSFLTPGIIYRCNLYVEKPELVVFRETVVPGFDRTEFEAKQ
B9GQ49__________________NTGSLLHQLPIDIGSVTGISARRKDSTVFIGFTSFLTPGIIYQCNLDTGVPDMKIFREITVPGFDRTEFQVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain