SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24544

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24544
AAAGGCAGCTGGGTTCAATGTGACAGATGCCAGATTTGGATTCATGCTGAATGTGCCAAAATTAACTACAAGCATCTTAAGGATCTCAAGGATGTTGAGTATTTCTGCCCTGATTGCAAGAAAGGACTGGGTATTGAGGCACTGCACAAGCAGCATATGGAAATTACAGCAAGTAAAACATCCAGGTCAGCTGCTGTGCCAGATTATCTTTCTGTTGTCTGCTCAGGGAAGGAAGGAAAATATTTACCAAAGCATCACTTAGTGCTTTGTGAATGCCATGGATGTGGAAAAGGTAGGAGAACATT

Ace file of the UniGene biog3_v1.0_unigene24544 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58181	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp\|Q8GZ42.1\|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5	-	-	8.0e-20	42%
FL-Next	sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	set domain protein	-	-	1.475e-26	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	1.475e-26	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GZ42

Fln msg: Distance to subject end: 512 aas, your sequence is shorter than subject: 101 - 1043

Fln protein: KGSWVQCDRCQIWIHAECAKINYKHLKDLKDVEYFCPDCKKGLGIEALHKQHMEITASKTSRSAAVPDYLSVVCSGKEGKYLPKHHLVLCECHGCGKGRRT

Protein Length: 102

Fln nts: AAAGGCAGCTGGGTTCAATGTGACAGATGCCAGATTTGGATTCATGCTGAATGTGCCAAAATTAACTACAAGCATCTTAAGGATCTCAAGGATGTTGAGTATTTCTGCCCTGATTGCAAGAAAGGACTGGGTATTGAGGCACTGCACAAGCAGCATATGGAAATTACAGCAAGTAAAACATCCAGGTCAGCTGCTGTGCCAGATTATCTTTCTGTTGTCTGCTCAGGGAAGGAAGGAAAATATTTACCAAAGCATCACTTAGTGCTTTGTGAATGCCATGGATGTGGAAAAGGTAGGAGAACATT

Fln Alignment:

biogeco3_mira_c24243___SWVQCDRCQIWIHAECAKINYKHLKDLKDVEYFCPDCKKGLGIEA--LHKQHMEITASKTSRSAAVPDYLSVVCSGKEGKYLPKHHLVLCECHGCGKGRR
Q8GZ42__________________SWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRTKFDFELSDSEKPDSKSKLGKNNAPMVLPDKVIVVCSGVEGIYFPSLHLVVCKCGSCGPERK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain