SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24510

Length: 365 nt

UniGene Fasta

>biog3_v1.0_unigene24510
AATGTAACTATATCGCCTGCATTGGCTAGTCTTAATTCTTTGAGGGCATTGTTGTTGAGTAATAATAATTTAACAGGGAGTATACCTAGCCAGCTCGCTTCGTTGCCCAATCTCGAGAAATTGGATGTTAGTAATAACCGATTGTCCGGTAAGGTCCCGGTTTTCAAGAAGAGTGTTATTGTGAACGTTGATGGGAATCCGCAGATTGGGAAAAATCCGCCATCGATACCCTCCCCTGGATCACGTCCCCAGACTCCTGATGAGTCACCGACTTCATCGACTCAGAATCCTGTAGCACCTACAGCAGGAAATAGGCCTGGAGCTGTTGCGGGTGCTAAGAAGGACAATAATCGATCATCTACATT

Ace file of the UniGene biog3_v1.0_unigene24510

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10145	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-18	26%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	35%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: Distance to subject end: 373 aas, your sequence is shorter than subject: 121 - 630

Fln protein: NVTISPALASLNSLRALLLSNNNLTGSIPSQLASLPNLEKLDVSNNRLSGKVPVFKKSVIVNVDGNPQIGKNPPSIPSPGSRPQTPDESPTSSTQNPVAPTAGNRPGAVAGAKKDNNRSST

Protein Length: 122

Fln nts: AATGTAACTATATCGCCTGCATTGGCTAGTCTTAATTCTTTGAGGGCATTGTTGTTGAGTAATAATAATTTAACAGGGAGTATACCTAGCCAGCTCGCTTCGTTGCCCAATCTCGAGAAATTGGATGTTAGTAATAACCGATTGTCCGGTAAGGTCCCGGTTTTCAAGAAGAGTGTTATTGTGAACGTTGATGGGAATCCGCAGATTGGGAAAAATCCGCCATCGATACCCTCCCCTGGATCACGTCCCCAGACTCCTGATGAGTCACCGACTTCATCGACTCAGAATCCTGTAGCACCTACAGCAGGAAATAGGCCTGGAGCTGTTGCGGGTGCTAAGAAGGACAATAATCGATCATCTACATT

Fln Alignment:

biogeco3_mira_c24192___TGSIPSQLASLPNLEKLDVSNNRLSGKVPV---FKKSVIVNVDGNPQIGKNPPSIPSPGSRPQTPDESPTSSTQNPVAPTAGNR------PGAVAG
D1MEH6__________________TGPIPKSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSP--PPPFVPPPPVAGSNGARVQSSSSTGAIAG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain