SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24497

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24497
TAAAGATGTCCTTCACAAGATCCCTATAACGGGCCACCTACAGGAATTTGTTGGTCAGTCCCAAATCTCTCGCCTGGAGTGTTTCAAGCTTGTCTGGTCTTATATTAAGACCAATAATCTTCAGGATGGAAAGAATAAAAACGAGGTGATCTGTGACGATAAACTGAAAAGCATTGTCCAAGGGAAGTCGTGCATTGATCTGTTGGATCTTCCCATGCTTATTAAAGCCCATTTCCCTAAAGACACCAAGTAATTGGCTCAGGTCATGTATATACTTGATTTGTCATTTTAGTGATCCTTGCCTTGGATTACCCCTCTTGTTTTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene24497 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15165	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] ref\|NP_001119064.1\| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] emb\|CAB36527.1\| putative protein [Arabidopsis thaliana] emb\|CAB79536.1\| putative protein [Arabidopsis thaliana] gb\|AA	-	-	8.0e-23	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	swib domain-containing protein	-	-	1.17292e-27	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	SWIB/MDM2 domain	IPR003121	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRD4

Fln msg: your sequence is shorter than subject: 84 - 129

Fln protein: KDVLHKIPITGHLQEFVGQSQISRLECFKLVWSYIKTNNLQDGKNKNEVICDDKLKSIVQGKSCIDLLDLPMLIKAHFPKDTK*

Protein Length: 85

Fln nts: TAAAGATGTCCTTCACAAGATCCCTATAACGGGCCACCTACAGGAATTTGTTGGTCAGTCCCAAATCTCTCGCCTGGAGTGTTTCAAGCTTGTCTGGTCTTATATTAAGACCAATAATCTTCAGGATGGAAAGAATAAAAACGAGGTGATCTGTGACGATAAACTGAAAAGCATTGTCCAAGGGAAGTCGTGCATTGATCTGTTGGATCTTCCCATGCTTATTAAAGCCCATTTCCCTAAAGACACCAAGTAA___TTGGCTCAGGTCATGTATATACTTGATTTGTCATTTTAGTGATCCTTGCCTTGGATTACCCCTCTTGTTTTTGTACATT

Fln Alignment:

biogeco3_mira_c24175___PITGHLQEFVGQSQISRLECFKLVWSYIKTNNLQDGKNKNEVICDDKLKSIVQGKSCIDLLDLPMLIKAHFPKD
A9NRD4__________________PISPAMQKFLGVSEIPRTKAIKKIWEYIKEKDLQDPANRREIVCDENLKSIFGGRERVGFLEISGLMKPHFIKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain