SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24491

Length: 320 nt

UniGene Fasta

>biog3_v1.0_unigene24491
AATGTAGACACAGTCCGCTCACTCAACACCTACGATATTCGTTGCGGACCTGTATCAGGTGCGAAAGGGCATTTGGTTCGCTACTGGAATACGTTATTTACTCGTTCTCTACAAAAACCCTACGAAGTGAAATGGTGACAAGCGAGAGCAAAAGCGGCGAGATTCTCCAGCTGTTCCTTAAGATTGGCTTGGACGAGAGGACTGCCCAAAATGCTATAGTCAATGGCAAGGTCTCCTCCAATTTGAAGGATGTTATTCGTGAGGCAGGTGTGGAAGATGGGTGCATCAAGTCTGTTGGAAATCTTCTGTACATGGTAGCA

Ace file of the UniGene biog3_v1.0_unigene24491

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35676	1/2
SustainPine v2.0	sp_v2.0_unigene36310	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Glutaminyl-tRNA synthetase; AltName: Full=Glutamine--tRNA ligase; Short=GlnRS emb\|CAA62901.1\| tRNA-glutamine synthetase [Lupinus luteus]	-	-	1.0e-38	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	trna-glutamine synthetase	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	78%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	78%
Blast2go	ovule development	GO:0048481	Biological Process	78%

Source	InterPros	Term	Type	Identity
Sma3	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib	IPR004514	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	IPR007638	-	-
Sma3	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	IPR007639	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ22

Fln msg: Distance to subject end: 731 aas, your sequence is shorter than subject: 106 - 832

Fln protein: CRHSPLTQHLRYSLRTCIRCERAFGSLLEYVIYSFSTKTLRSEMVTSESKSGEILQLFLKIGLDERTAQNAIVNGKVSSNLKDVIREAGVEDGCIKSVGNLLYMVA

Protein Length: 107

Fln nts: AATGTAGACACAGTCCGCTCACTCAACACCTACGATATTCGTTGCGGACCTGTATCAGGTGCGAAAGGGCATTTGGTTCGCTACTGGAATACGTTATTTACTCGTTCTCTACAAAAACCCTACGAAGTGAAATGGTGACAAGCGAGAGCAAAAGCGGCGAGATTCTCCAGCTGTTCCTTAAGATTGGCTTGGACGAGAGGACTGCCCAAAATGCTATAGTCAATGGCAAGGTCTCCTCCAATTTGAAGGATGTTATTCGTGAGGCAGGTGTGGAAGATGGGTGCATCAAGTCTGTTGGAAATCTTCTGTACATGGTAGCA

Fln Alignment:

biogeco3_mira_c24166___RHSPLTQHLRYSLRTCIRCERAFGSLLEYVIYSFSTKTLRSEMVTSESKSGEILQLFLKIGLDERTAQNAIVNGKVSSNLKDVIREAGVEDGCIKSVGNLLYMVA
B8LQ22__________________RQNPLTQPLRYSLRTSI-----------------------SKMVTSDSNSGEILQLFLKIGLDERTAQNAIVNGKVSSNLTDVIHEAGVEDGCIKSVGNLLYMVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain