SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24473

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene24473
AATGTTGGAGGATTCCAAGAAAATGTCGGACGATGCAGAGTCCAGTTCAGAGTCAGACTCGGACTCAGAAGATGAAGGCGCCCAAGATGCTCATGTTCTGTCCCTGGAGGCTGCAGTTGCAGAAAATCCTCTTAATTATGATACTAATGTAGAGTACATTCAAGCACTTAGAAAATACGGCCATGTGGAGAAGCTTCGAAAAGCAAGAGAAGCAATGAGTGCATTGTTTCCTCTGAATCCTACGATGTGGCAGGAGTGGACAAAGGATGAAGCTTGCCTGATTACCAGTTCTGAAGCTGTGTCAAGCATTGAGCCATTGTATGAGCGGGGAGTACATGAGTATCTGTCTGTTCCTTTATGGTCCGAGTATCTGAACTTCATACAAGAGCGTGATGAGTCTGTAACATT

Ace file of the UniGene biog3_v1.0_unigene24473

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30669	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO	-	-	58%
FL-Next	tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean).	-	-	62%
Blast2go	squamous cell carcinoma antigen recognized by t-cells 3-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Lsm interaction	IPR008669	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SPA3

Fln msg: Distance to subject end: 680 aas, your sequence is shorter than subject: 135 - 852

Fln protein: MLEDSKKMSDDAESSSESDSDSEDEGAQDAHVLSLEAAVAENPLNYDTNVEYIQALRKYGHVEKLRKAREAMSALFPLNPTMWQEWTKDEACLITSSEAVSSIEPLYERGVHEYLSVPLWSEYLNFIQERDESVT

Protein Length: 136

Fln nts: AATGTTGGAGGATTCCAAGAAAATGTCGGACGATGCAGAGTCCAGTTCAGAGTCAGACTCGGACTCAGAAGATGAAGGCGCCCAAGATGCTCATGTTCTGTCCCTGGAGGCTGCAGTTGCAGAAAATCCTCTTAATTATGATACTAATGTAGAGTACATTCAAGCACTTAGAAAATACGGCCATGTGGAGAAGCTTCGAAAAGCAAGAGAAGCAATGAGTGCATTGTTTCCTCTGAATCCTACGATGTGGCAGGAGTGGACAAAGGATGAAGCTTGCCTGATTACCAGTTCTGAAGCTGTGTCAAGCATTGAGCCATTGTATGAGCGGGGAGTACATGAGTATCTGTCTGTTCCTTTATGGTCCGAGTATCTGAACTTCATACAAGAGCGTGATGAGTCTGTAACATT

Fln Alignment:

biogeco3_mira_c24139___QDAHVLSLEAAVAENPLNYDTNVEYIQALRKYGHVEKLRKAREAMSALFPLNPTMWQEWTKDEACLITSSEAVSSIEPLYERGVHEYLSVPLWSEYLNFIQE
B9SPA3__________________QNEQLKSLEAELSSNPSNYDAHVQYIKLLRKMGEIEKLREAREAMSASFPLTPIMWQEWAKDEASLSTGPEGYSVVEKLYERGVSDYLSVPLWCDYLNYVQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain