SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24466

Length: 390 nt

UniGene Fasta

>biog3_v1.0_unigene24466
ACAGATTCCCTAAGAGCTCAAACATGGAACAGCGCTTCAACTCTCTGACTGCATTGGAAATCTTGAGAGAATGTATCAGAATCCTTCGCTTTAATTCGTCGGGCTTCCTGGTAATTGCAGCGCTACTTATCTGCCCTGTATCGACAATTCTTCTCTCCAATGCCTTTGTAGATCAATCTGTGGTTGGAAAACTGTCTTTTAGGTTTAGATTAGTAGCAGAGACATCCGGGCTGCCTAAGAGCAATTTTACCGAACTTGTGTGCCGGAAATTATCTGAGAGTGTTCTTTCGTTGACATTCTGCTTCCCTTTCTTGATCACCCTTTGGCTATTTGGCAAAGCTGCAATAGTGCACTCCGTGGCTGGAACGTATGCAGGTAAGAAACTTACAA

Ace file of the UniGene biog3_v1.0_unigene24466

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11134	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AAG60093.1\|AC073178_4 unknown protein [Arabidopsis thaliana] gb\|AAX55097.1\| hypothetical protein At1g69430 [Arabidopsis thaliana] gb\|AAZ52711.1\| hypothetical protein At1g69430 [Arabidopsis thaliana] gb\|AEE	-	-	45%
FL-Next	tr=Putative uncharacterized protein F10D13_10; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	uncharacterized protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Asp/Glu racemase, active site	IPR018187	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9C794

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 129 - 350

Fln protein: RFPKSSNMEQRFNSLTALEILRECIRILRFNSSGFLVIAALLICPVSTILLSNAFVDQSVVGKLSFRFRLVAETSGLPKSNFTELVCRKLSESVLSLTFCFPFLITLWLFGKAAIVHSVAGTYAGKKLT

Protein Length: 130

Fln nts: ACAGATTCCCTAAGAGCTCAAACATGGAACAGCGCTTCAACTCTCTGACTGCATTGGAAATCTTGAGAGAATGTATCAGAATCCTTCGCTTTAATTCGTCGGGCTTCCTGGTAATTGCAGCGCTACTTATCTGCCCTGTATCGACAATTCTTCTCTCCAATGCCTTTGTAGATCAATCTGTGGTTGGAAAACTGTCTTTTAGGTTTAGATTAGTAGCAGAGACATCCGGGCTGCCTAAGAGCAATTTTACCGAACTTGTGTGCCGGAAATTATCTGAGAGTGTTCTTTCGTTGACATTCTGCTTCCCTTTCTTGATCACCCTTTGGCTATTTGGCAAAGCTGCAATAGTGCACTCCGTGGCTGGAACGTATGCAGGTAAGAAACTTACAA

Fln Alignment:

biogeco3_mira_c24130___SSNMEQRFNSLTALEILRECIRILRFNSSGFLVIAALLICPVSTILLSNAFVDQSVVGKLSFRFRLVAETSGLPKSNFTELVCRKLSESVLSLTFCFPFLITLWLFGKAAIVHSVAGTYAGKKL
Q9C794__________________SSSSDHKFHSMNALEILRETVRILRYNLGAFMLIALLLICPVSAILLPNLLVDQSVVNSLTVRLLLVSKSSGLPLLPFVRNSCQKFSETAVSSAMCFPLFITLSLLSRAAVVYSVDCTYSRKKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain