SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24450

Length: 353 nt

UniGene Fasta

>biog3_v1.0_unigene24450
AATGTTCTTCTTTTGTTCTGAATATAGTGAACAAGAGTGGAAACGGTGGCGATGGCTTGGCTTTCATTGTAACGAATGAGAAAAATGGTTCCCCTGAGAATAGTTACGGGCAGTATCTGGGACTGTTCAACTCTACCACGAATGGGGATTCAAATAACAGATTGGTTGCAGTGGAGTTCGATACCAGAAAGAGCAATGCCAACGACACAGATGATAATCACGTCGGAATAGATGTGAACAAGATAGAATCCATCAAAAGTGCTTCTGTGAGTCCTCGCAATATTACCCTTCTAAGCCAATCGGACATTGCTGCGCTGGTTCAGTACGACGGGGGGTTCGAAACTGTTGACATT

Ace file of the UniGene biog3_v1.0_unigene24450

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35873	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana] sp\|Q9FG33.1\|LRKS5_ARATH RecName: Full=Probable L-type lectin-domain containing receptor kinase S.5; Short=LecRK-S.5; Flags: Precursor dbj\|BAB09808.1\| lectin-like protein kinase [Arabido	-	-	3.0e-40	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	atp binding	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Lectin	IPR016363	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Distance to subject end: 417 aas, your sequence is shorter than subject: 117 - 636

Fln protein: CSSFVLNIVNKSGNGGDGLAFIVTNEKNGSPENSYGQYLGLFNSTTNGDSNNRLVAVEFDTRKSNANDTDDNHVGIDVNKIESIKSASVSPRNITLLSQSDIAALVQYDGGFETVDI

Protein Length: 118

Fln nts: AATGTTCTTCTTTTGTTCTGAATATAGTGAACAAGAGTGGAAACGGTGGCGATGGCTTGGCTTTCATTGTAACGAATGAGAAAAATGGTTCCCCTGAGAATAGTTACGGGCAGTATCTGGGACTGTTCAACTCTACCACGAATGGGGATTCAAATAACAGATTGGTTGCAGTGGAGTTCGATACCAGAAAGAGCAATGCCAACGACACAGATGATAATCACGTCGGAATAGATGTGAACAAGATAGAATCCATCAAAAGTGCTTCTGTGAGTCCTCGCAATATTACCCTTCTAAGCCAATCGGACATTGCTGCGCTGGTTCAGTACGACGGGGGGTTCGAAACTGTTGACATT

Fln Alignment:

biogeco3_mira_c24107___SSFVLNIVNKSGN-GGDGLAFIVTNEKNGSPENSYGQYLGLFNSTTNGDSNNRLVAVEFDT-RKSNANDTDDNHVGIDVNKIESIKSASVSPRN------ITLLSQSDIAALVQYD
A9NVC0__________________TTFVFSIVPPPSNAGGNGIAFFMTPHTS-SMDAQPSQYLGLLNLTTNGQAYNHLFAVEFDTIMNVEFNDPDGNHVGVDVNNLVSVQTETAGYWNGEEFHELNLRSGRNIQAWIDYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain