SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24449

Length: 188 nt

UniGene Fasta

>biog3_v1.0_unigene24449
AATGTTATCGTATCAGACCTACAATGAAGCACTATACCTGCATTGTTGATCTTCTTGGTCGTGCCGGGCGGCTAGATGAAGCAGAAGACTTTATCAGCAAAATCCCAATAAAACCCGATGCTACTGTCTGGGAGTGTTTGCTTGGTGCCTGTCGACTTCATAATAATATAGAGCTAGGAGAACGTGCT

Ace file of the UniGene biog3_v1.0_unigene24449

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54923	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FJY7.1\|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520 dbj\|BAB10928.1\| selenium-binding protein-like [Arabidopsis thaliana] gb\|AED98224.1\| pentatricope	-	-	6.0e-17	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	at1g74600-like protein	-	-	7.35081e-29	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 62 - 232

Fln protein: CYRIRPTMKHYTCIVDLLGRAGRLDEAEDFISKIPIKPDATVWECLLGACRLHNNIELGERA

Protein Length: 63

Fln nts: AATGTTATCGTATCAGACCTACAATGAAGCACTATACCTGCATTGTTGATCTTCTTGGTCGTGCCGGGCGGCTAGATGAAGCAGAAGACTTTATCAGCAAAATCCCAATAAAACCCGATGCTACTGTCTGGGAGTGTTTGCTTGGTGCCTGTCGACTTCATAATAATATAGAGCTAGGAGAACGTGCT

Fln Alignment:

biogeco3_mira_c24105___YRIRPTMKHYTCIVDLLGRAGRLDEAEDFISKIPIKPDATVWECLLGACRLHNNIELGER
D5AB53__________________YHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSLLGACRTHANVDLGEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain