SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24349

Length: 275 nt

UniGene Fasta

>biog3_v1.0_unigene24349
CATCGCGCTTCATCAGTGACCACCTGTTTTTGCATCTTATGAGGTTTGCATGGGAAGAAGGATGTATGTCAGATGAGGTCCTTAGGAGGGCTATTATTGCCACTGAGGAGGGGTTTCTTGCACACGTTACTAGATCATGGAAGACAACGCCACTGATTGCAGCAGTTGTTCATGCTGCCTAGTTGGAGTTATATGGGGTGAAAAACTTTATGTTGCCAATGTTGGGGACTCTCGGGCAGTAATGGGAAGCATATCAAGGTCCAGTAATAAACATT

Ace file of the UniGene biog3_v1.0_unigene24349

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28320	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 68 [Arabidopsis thaliana] ref\|NP_001119181.1\| putative protein phosphatase 2C 68 [Arabidopsis thaliana] sp\|Q84JD5.1\|P2C68_ARATH RecName: Full=Probable protein phosphatase 2C 68; Short=AtPP2C68 gb\|AAO42197.1\| putative protei	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein phosphatase 2c 68	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg: Overlapping hits, possible frame ERROR between 227 and 170, Distance to subject end: 194 aas, your sequence is shorter than subject: 91 - 370

Fln protein: SRFISDHLFLHLMRFAWEEGCMSDEVLRRAIIATEEGFLAHVTRSWKTTPLIAAVxxxxxxxxxxxxxxxxxxxxxSRAVMGSISRSSNKH

Protein Length: 92

Fln nts: CATCGCGCTTCATCAGTGACCACCTGTTTTTGCATCTTATGAGGTTTGCATGGGAAGAAGGATGTATGTCAGATGAGGTCCTTAGGAGGGCTATTATTGCCACTGAGGAGGGGTTTCTTGCACACGTTACTAGATCATGGAAGACAACGCCACTGATTGCAGCAGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTCGGGCAGTAATGGGAAGCATATCAAGGTCCAGTAATAAACATT

Fln Alignment:

biogeco3_mira_c23964___SRFISDHLFLHLMRFAWEEGCMSDEVLRRAIIATEEGFLAHVTRSWKTTPLIAAVVxxxxxxxxxxxxxxxxxxxDSRAVMGSISRSSNK
D5AA04__________________ARFINDHLFRHFQNFALEQRGMSAEVIRNAFLATEEGFLSLVTNAWPTKPQLAAVGxxxxxxxxxxxxxxxxxxxDSRVVMGRLIRATGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain