SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24318

Length: 258 nt

UniGene Fasta

>biog3_v1.0_unigene24318
AATGTCTATTGTGGGATCACGTGCATTTGAAATTGATGATTATCATGGTTATGGCATGGTACCTTTGGCAGATTTATTTAACCATAAGACTGCAGCAGAGGATGTTCACTTTACCTTAGTGCCCATCGATTACAGTACTGATATAGACAAACCTGAAGCATCTTATAGCGATGAAGAGTGTAATACCAGATCATGTAGTGACATTTCAGATTGTGTGCATTCTGAAGCTGATACCGGCTTATCTCAAAGCCTCAATGG

Ace file of the UniGene biog3_v1.0_unigene24318

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37506	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain-containing protein [Arabidopsis thaliana] emb\|CAB88060.1\| putative protein [Arabidopsis thaliana] gb\|AEE79536.1\| SET domain-containing protein [Arabidopsis thaliana]	-	-	5.04467e-44	42%
FL-Next	tr=Putative uncharacterized protein T5P19_220; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Blast2go	set domain-containing protein	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr histidine phosphorylation site	IPR001020	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	RuBisCO-cytochrome methylase, RMS1	IPR011383	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LXY3

Fln msg: Distance to subject end: 281 aas, your sequence is shorter than subject: 85 - 531

Fln protein: MSIVGSRAFEIDDYHGYGMVPLADLFNHKTAAEDVHFTLVPIDYSTDIDKPEASYSDEECNTRSCSDISDCVHSEADTGLSQSLN

Protein Length: 86

Fln nts: AATGTCTATTGTGGGATCACGTGCATTTGAAATTGATGATTATCATGGTTATGGCATGGTACCTTTGGCAGATTTATTTAACCATAAGACTGCAGCAGAGGATGTTCACTTTACCTTAGTGCCCATCGATTACAGTACTGATATAGACAAACCTGAAGCATCTTATAGCGATGAAGAGTGTAATACCAGATCATGTAGTGACATTTCAGATTGTGTGCATTCTGAAGCTGATACCGGCTTATCTCAAAGCCTCAATGG

Fln Alignment:

biogeco3_mira_c23917___SIVGSRAFEIDDYHGYGMVPLADLFNHKTAAEDVHFTLVPIDYSTDIDKPEASYSDEECNTRSCSDISDCVHSEADTGLSQ
Q9LXY3__________________SLIASRSFEIDDYHGSGMVPLADLFNHKTGAEDVHFT-----HESDSEADESDNDDAANETTDEDEPSSKISSSPEQSFEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain