SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24272

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene24272
AATGTTGACAAGTTTGATATATCTGGATCTGAGTTTCTGTCAAGGAGTAAAATACATTCCTTGTGGGATCTCAACGCTCACATCGTTGCAGTATCTGAAAATGGAAAAGTGCTGGAAAGTTTGGGGGCAAACATCACAGCCGAGATCAAATTTATGTGATCTGAGGGTAAGTCGTGCAGAGTACAAACGAGCTGTTATCTTCAGTGATCTGCACAGCCTGAAGCACCTCAAATGGCTGG

Ace file of the UniGene biog3_v1.0_unigene24272

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30647	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J5_PINTA	-	-	2.0e-07	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	nbs lrr	-	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABU5

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 79 - 425

Fln protein: MLTSLIYLDLSFCQGVKYIPCGISTLTSLQYLKMEKCWKVWGQTSQPRSNLCDLRVSRAEYKRAVIFSDLHSLKHLKWL

Protein Length: 80

Fln nts: AATGTTGACAAGTTTGATATATCTGGATCTGAGTTTCTGTCAAGGAGTAAAATACATTCCTTGTGGGATCTCAACGCTCACATCGTTGCAGTATCTGAAAATGGAAAAGTGCTGGAAAGTTTGGGGGCAAACATCACAGCCGAGATCAAATTTATGTGATCTGAGGGTAAGTCGTGCAGAGTACAAACGAGCTGTTATCTTCAGTGATCTGCACAGCCTGAAGCACCTCAAATGGCTGG

Fln Alignment:

biogeco3_mira_c23849___LTSLIYLDLSFCQGVKYIPCGISTLTSLQYLKMEKCWKVWGQTSQPRSNLCDLRVSRAEYKRAVIFSDLHSLKHLKWL
D5ABU5__________________MTGLLYLDLSFCPGLNCIPCGISMLTSLQYLKMEKCWKAWQPTPQPRKTLCDLTGGRAEYKRAARFNDLHSLKHLKWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain