SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24209

Length: 307 nt

UniGene Fasta

>biog3_v1.0_unigene24209
CCCTGACGAGTGTCTGCGGTCTACAGCACCCTGGCCACGATCGAAAATATGATTGAGGTCCGCCCAGCGGTGTCAGAGTCCGTCTGCGAGAAGACAAAGCTCATGCGGTGGCTCTTGACGAGAATCAAGCCCCGGGAGTTCGACAGCAATAAGCAGTATGCCACGGAGATCCTGGCCATCTTACTGCAGAGCAGCGCCGCGAACCAGCGGCGCCTTGGGCAGATGAACGGAGTCGACACCGTGCTCCAGGCCGTCGCGCTCTACAAGTCCCGGGATCCCAAGAGCGGGGACGAAGAGGAAATACATT

Ace file of the UniGene biog3_v1.0_unigene24209

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6988	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-catenin-like protein 1 n=1 Tax=Zea mays RepID=B6SWH5_MAIZE	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	beta-catenin-like protein 1-like	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	0.0	89%
Blast2go	binding	GO:0005488	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1716, eukaryotic	IPR013180	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS07

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 102 - 348

Fln protein: P*RVSAVYSTLATIENMIEVRPAVSESVCEKTKLMRWLLTRIKPREFDSNKQYATEILAILLQSSAANQRRLGQMNGVDTVLQAVALYKSRDPKSGDEEEIH

Protein Length: 103

Fln nts: CCCTGACGAGTGTCTGCGGTCTACAGCACCCTGGCCACGATCGAAAATATGATTGAGGTCCGCCCAGCGGTGTCAGAGTCCGTCTGCGAGAAGACAAAGCTCATGCGGTGGCTCTTGACGAGAATCAAGCCCCGGGAGTTCGACAGCAATAAGCAGTATGCCACGGAGATCCTGGCCATCTTACTGCAGAGCAGCGCCGCGAACCAGCGGCGCCTTGGGCAGATGAACGGAGTCGACACCGTGCTCCAGGCCGTCGCGCTCTACAAGTCCCGGGATCCCAAGAGCGGGGACGAAGAGGAAATACATT

Fln Alignment:

biogeco3_mira_c23767___P*RVSAVYSTLATIENMIEVRPAVSESVCEKTKLMRWLLTRIKPREFDSNKQYATEILAILLQSSAANQRRLGQMNGVDTVLQAVALYKSRDPKSGDEEEI
B8LS07__________________PDESAAVYSTLATIENMIEVRPAVSESVCEKTKLLRWLLTRIKPREFDSNKQYATEILVILLQSSAANQRRLGQMNGVDTVLQAVALYKSRDPKSGDEEEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain