SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24201

Length: 269 nt

UniGene Fasta

>biog3_v1.0_unigene24201
TTTTGTGTTTGTGAGGTTTTAGCAATTGAGCAAGGTGGGTGAAGGAGCTGATCTATAGGGAAATAATTAGTGGGTACATTGTTGGAGAGAGAGAGCCGAAGCCATGGCGAAACCCAGTATTGTATTTTGGTACATTTTGTTTGTTGGGATTCTTGCAGGCCTGGAGTTTGTTCGGGCTCAAAACTCGAGTTCGAATTCCTCTGCTGTGGAGAATCCAGAGATGGTAGTTGATATGGTCGAAAGGAGTATTAATAGCTCAAGAAGGCAGC

Ace file of the UniGene biog3_v1.0_unigene24201

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7383	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase [Gossypium hirsutum]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	pectate lyase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectate lyase.	EC:4.2.2.2	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040		0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	pectate lyase activity	GO:0030570	Molecular Function	0.0	86%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	AmbAllergen	IPR018082	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ61

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 55 - 420

Fln protein: MAKPSIVFWYILFVGILAGLEFVRAQNSSSNSSAVENPEMVVDMVERSINSSRRQ

Protein Length: 56

Fln nts: TTTTGTGTTTGTGAGGTTTTAGCAATTGAGCAAGGTGGGTGAAGGAGCTGATCTATAGGGAAATAATTAGTGGGTACATTGTTGGAGAGAGAGAGCCGAAGCC_-_ATGGCGAAACCCAGTATTGTATTTTGGTACATTTTGTTTGTTGGGATTCTTGCAGGCCTGGAGTTTGTTCGGGCTCAAAACTCGAGTTCGAATTCCTCTGCTGTGGAGAATCCAGAGATGGTAGTTGATATGGTCGAAAGGAGTATTAATAGCTCAAGAAGGCAGC

Fln Alignment:

biogeco3_mira_c23754___MAKPSIVFWYILFVGILAGLEFVRAQNSSSNSSAVENPEMVVDMVERSINSSRRQ
B8LQ61__________________MANSSIVLGYFLFVVILAGLEFVRAQ--SSNSSAVEDPEMVVEMVERSINSSRRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain