SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24182

Length: 286 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24182
ATATAGAAATTATAATGTCAGAGGACACAGAGACGATAGATGAATCAGTTGAAAGTAATTTCAGAAGATCTGGAAGAAATGGAACATTACCTATGTATGATGTGAATGGCTTGAATGGATATAAGTTTTAACAAGTGCCACCACCTTTGTTCATATTTATTTGCTTTAATTGGTTTCTTTTGAAAAAATCTGGATATTGAGTAATGGGATCACATTTAATGAGATTGTATAATACGAAAGGCAGGAGATTTGGTGGAAACTCTTCCATAAGCAGGATATCTGGTCC

Ace file of the UniGene biog3_v1.0_unigene24182 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9853	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Herpes_gp2 multi-domain protein	-	-	2.0e-06	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	69%
Blast2go	nucleolus	GO:0005730	Cellular Component	69%
Blast2go	plastid	GO:0009536	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR97

Fln msg: your sequence is shorter than subject: 43 - 446

Fln protein: IEIIMSEDTETIDESVESNFRRSGRNGTLPMYDVNGLNGYKF*

Protein Length: 44

Fln nts: ATATAGAAATTATAATGTCAGAGGACACAGAGACGATAGATGAATCAGTTGAAAGTAATTTCAGAAGATCTGGAAGAAATGGAACATTACCTATGTATGATGTGAATGGCTTGAATGGATATAAGTTTTAA___CAAGTGCCACCACCTTTGTTCATATTTATTTGCTTTAATTGGTTTCTTTTGAAAAAATCTGGATATTGAGTAATGGGATCACATTTAATGAGATTGTATAATACGAAAGGCAGGAGATTTGGTGGAAACTCTTCCATAAGCAGGATATCTGGTCC

Fln Alignment:

biogeco3_mira_c23726___IEIIMSEDTETIDESVESNFRRSGRNGTLPMYDVNGLNGY
B8LR97__________________IEIIMSEDTETIDESVESDFRRSRRNGTLPMYDTNGLNGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain