SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24155

Length: 257 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24155
AATGTACATTTCATCATGCTATGCCAAGACCCCCAAACAAGAGTTTTCACGTGGTTATGGCTCCAAAGAGCACGCGGAGATGATAAGAAGAATGGAGCGACAACCTCAAAAGCAATGGCCAAAGGGTGAGTTTTGGGAATTCAAGAGTAATCGTGGATTGTTTGGGAGTCCGATGTTCGATGCTGTTATGAACAACTCACCTTTAGATAAAGAACTCATGCAGTGGCTGAAAAACAGGCATGTTGTATTTGAACATT

Ace file of the UniGene biog3_v1.0_unigene24155 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8061	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain-containing protein (ISS) [Ostreococcus tauri] emb\|CAL55747.1\| SET domain-containing protein (ISS) [Ostreococcus tauri]	-	-	33%
FL-Next	sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	probable histone-lysine n-methyltransferase atxr3-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	carpel development	GO:0048440	Biological Process	76%
Blast2go	histone lysine methylation	GO:0034968	Biological Process	76%
Blast2go	stamen development	GO:0048443	Biological Process	76%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	76%
Blast2go	histone methyltransferase activity (H3-K4 specific)	GO:0042800	Molecular Function	76%
Blast2go	metal ion binding	GO:0046872	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Histone-lysine N-methyltransferase	IPR015722	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O23372

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 85 - 2335

Fln protein: MYISSCYAKTPKQEFSRGYGSKEHAEMIRRMERQPQKQWPKGEFWEFKSNRGLFGSPMFDAVMNNSPLDKELMQWLKNRHVVFEH

Protein Length: 86

Fln nts: AATGTACATTTCATCATGCTATGCCAAGACCCCCAAACAAGAGTTTTCACGTGGTTATGGCTCCAAAGAGCACGCGGAGATGATAAGAAGAATGGAGCGACAACCTCAAAAGCAATGGCCAAAGGGTGAGTTTTGGGAATTCAAGAGTAATCGTGGATTGTTTGGGAGTCCGATGTTCGATGCTGTTATGAACAACTCACCTTTAGATAAAGAACTCATGCAGTGGCTGAAAAACAGGCATGTTGTATTTGAACATT

Fln Alignment:

biogeco3_mira_c23680___ISSCYAKTPKQEFSRGYGSKEHAEMIRRMERQPQKQWPKGEFWEFKSNRGLFGSPMFDAVMNN-SPLDKELMQWLKNRHVVFE
O23372__________________VASFYAKAQKPSKHRVYGPKTVKTMVSQMSKQPQRPWPKDKIWTFKSTPRVFGSPMFDAVLNNSSSLDRELLQWLRNRRHVFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain