SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24148

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24148
AGAGATGATGCAGATAACTGACATGGGGAGAAACAACAGTCCTGCCACCGAAAAGTTCAATGAGCTGGACAAAGATGTGAAGCATGAGGTGAATCGCAGAGCTCACACGTCCAGTTCTGAGCCTGAGGGTACCAAGACTCCTGATGCCAAGACATTGAGGAGGCTTGCTCAAAATCGAGAGGCTGCTCGGAAAAGTAGATTGAGGAAGAAGGCATACGTTCAGCAATTAGAAAGCAACAATAAACATT

Ace file of the UniGene biog3_v1.0_unigene24148 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9874	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	TGA10 transcription factor n=1 Tax=Nicotiana tabacum RepID=Q52MZ2_TOBAC	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	transcription factor hbp-1b -like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	71%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	TIP41-like protein	IPR007303	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLW5

Fln msg: Distance to subject end: 89 aas, atg_distance in limit (1-15): atg_distance = 8, No stop codon before M and low homology subject, your sequence is shorter than subject: 81 - 173

Fln protein: MMQITDMGRNNSPATEKFNELDKDVKHEVNRRAHTSSSEPEGTKTPDAKTLRRLAQNREAARKSRLRKKAYVQQLESNNKH

Protein Length: 82

Fln nts: AGAG_-_ATGATGCAGATAACTGACATGGGGAGAAACAACAGTCCTGCCACCGAAAAGTTCAATGAGCTGGACAAAGATGTGAAGCATGAGGTGAATCGCAGAGCTCACACGTCCAGTTCTGAGCCTGAGGGTACCAAGACTCCTGATGCCAAGACATTGAGGAGGCTTGCTCAAAATCGAGAGGCTGCTCGGAAAAGTAGATTGAGGAAGAAGGCATACGTTCAGCAATTAGAAAGCAACAATAAACATT

Fln Alignment:

biogeco3_mira_c23673___MMQITDMGRNNS-PATEKFNELDKDVKHEVNRRAHTSSSEPEGTKTPDAKTLRRLAQNREAARKSRLRKKAYVQQLESNNKH
B8LLW5__________________MFPNSGMGLNPSVTSSEPSSQVSGSIPH------HYSGSEEDPKQTIDERKQKRMLSNRESARRSRMRKQQHLDELRAEAAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain