SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24144

Length: 281 nt

UniGene Fasta

>biog3_v1.0_unigene24144
AATGTAAACTGCTTCAAATGACAGGCAATGAAGATGCAACAAACTTTGAGAGGTTTGTTGCAGGTGCTGCAGCAGGCATTACTGCCACTATTCTTTGCATACCTATGGACACTATCCGCACGAAGATGGTTGCACCAGGCGGTGAAGTACTAGGAGGTGTTATTGGGGTTTGCCGGCACATGGTTCAGACAGAGGGTTTCTTTTCATTATACAAGGGTTTGTTACCAGCTATTATAAGCATGGCACCTTCAGGTGCAGTGTTTTATGGTGTCTATGATATA

Ace file of the UniGene biog3_v1.0_unigene24144

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1408	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] dbj\|BAA97309.1\| mitochondrial carrier protein-like [Arabidopsis thaliana] gb\|AAP40437.1\| putative mitochondrial carrier protein [Arabidopsis thaliana] gb\|AAU90078.1\| At5g64970 [Arabidop	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	mitochondrial substrate carrier family protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	89%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	transporter activity	GO:0005215	Molecular Function	89%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAX1

Fln msg: Distance to subject end: 146 aas, your sequence is shorter than subject: 93 - 255

Fln protein: CKLLQMTGNEDATNFERFVAGAAAGITATILCIPMDTIRTKMVAPGGEVLGGVIGVCRHMVQTEGFFSLYKGLLPAIISMAPSGAVFYGVYDI

Protein Length: 94

Fln nts: AATGTAAACTGCTTCAAATGACAGGCAATGAAGATGCAACAAACTTTGAGAGGTTTGTTGCAGGTGCTGCAGCAGGCATTACTGCCACTATTCTTTGCATACCTATGGACACTATCCGCACGAAGATGGTTGCACCAGGCGGTGAAGTACTAGGAGGTGTTATTGGGGTTTGCCGGCACATGGTTCAGACAGAGGGTTTCTTTTCATTATACAAGGGTTTGTTACCAGCTATTATAAGCATGGCACCTTCAGGTGCAGTGTTTTATGGTGTCTATGATATA

Fln Alignment:

biogeco3_mira_c23668___LLQMTGNEDATNFERFVXXXXXXXXXXXLCIPMDTIRTKMVAPGGEVLGGVIGVCRHMVQTEGFFSLYKGLLPAIISMAPSGAVFYGVYDI
D5AAX1__________________LLKIPGKGEITNYDRLAAGAVSGITATMLSLPMDTIRTRLIAPGGEALGGVVGCFQHMVRTEGFFSLYKGLMPTLLSMAPASAVFYGVYDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain