SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24109

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene24109
AATGTCGATGATGAAGAACCGAAAGAAGACGAAGAAAGTGAAGCCACGATCTCTGCCCCTGAAGATGATTCGTTTGAGCTGGACCTCTCAGAAATGTCTTGCCAGCACGCAGGTTCTTGAGCCAGAATTCCGCACCACCCTCGCTGAGCTGCTGGATGATGCCAAGGTGGTTCCAGTGTCCGTTGATGGAGATTTGGATGTAGAGATCACAGGCATCCAGCATGA

Ace file of the UniGene biog3_v1.0_unigene24109

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11783	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative n=1 Tax=Ricinus communis RepID=B9RCC8_RICCO	-	-	66%
FL-Next	tr=Putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase; Raphanus sativus (Radish).	-	-	68%
Blast2go	udp-n-acetylmuramoyl-l-alanyl-d-glutamate-- -diaminopimelate ligase-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase.	EC:6.3.2.13	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine biosynthesis	00300		0.0	78%
Blast2go	Peptidoglycan biosynthesis	00550		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell shape	GO:0008360	Biological Process	78%
Blast2go	cell division	GO:0051301	Biological Process	78%
Blast2go	peptidoglycan biosynthetic process	GO:0009252	Biological Process	78%
Blast2go	chloroplast fission	GO:0010020	Biological Process	78%
Blast2go	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity	GO:0008765	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	nucleoid	GO:0009295	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mur ligase, N-terminal	IPR000713	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	-
Sma3	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase	IPR005761	-	-
Sma3	Mur ligase, central	IPR013221	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C4WRH2

Fln msg: Distance to subject end: 500 aas, your sequence is shorter than subject: 74 - 871

Fln protein: MSMMKNRKKTKKVKPRSLPLKMIRLSWTSQKCLASTQVLEPEFRTTLAELLDDAKVVPVSVDGDLDVEITGIQH

Protein Length: 75

Fln nts: AATGTCGATGATGAAGAACCGAAAGAAGACGAAGAAAGTGAAGCCACGATCTCTGCCCCTGAAGATGATTCGTTTGAGCTGGACCTCTCAGAAATGTCTTGCCAGCACGCAGGTTCTTGAGCCAGAATTCCGCACCACCCTCGCTGAGCTGCTGGATGATGCCAAGGTGGTTCCAGTGTCCGTTGATGGAGATTTGGATGTAGAGATCACAGGCATCCAGCATGA

Fln Alignment:

biogeco3_mira_c23625___ASTQVLEPEFRTTLAELLDDAKVVPVSVDGDLDVEITGIQH
C4WRH2__________________SKARIVEPKFRLSLAELLDESKVVPISVYGDLDVEITGIQH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain