SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24105

Length: 465 nt

UniGene Fasta

>biog3_v1.0_unigene24105
AATGTTATAAATTTCTATGGAAATGATTATGTTCTTCCACGAGGTGGTGCACCTATCCTTGGTCATGGATACCTCTCCTTGCTTAGAACACACAAGCCAATGTTGTTTTGGGATGAGCAGAACATGGAGCATTATTTTGATTATGAGGAGCGACTGAACATGTATAGAGTCTTTTACCCTTCTTTGAAGTCAATTTCCTTGCGGCTGGAAGAAGCACAAGCATGGGGTGTTGGTTTATCAATCTGGGAGATAGGTCAAGGACTGGAATATTTCTTTGATCTGCTGTAATTTCTCTAAATTATCTTGTAGTAGCGGAATGAAAGTTCTCCCTAACTTATTTGAGTTCTGTCATTTGTTGTTAAATTTTACACCTAGGCAAATTAGGGGTGAGGAGCACGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAAGAGGTTCTGCAGTTTGTCTCAAATGACTT

Ace file of the UniGene biog3_v1.0_unigene24105

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9799	1/2
SustainPine v2.0	sp_v2.0_unigene36177	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 18 protein [Arabidopsis thaliana] emb\|CAB80913.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE81972.1\| glycosyl hydrolase family 18 protein [Arabidopsis thaliana]	-	-	2.0e-09	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	chitinase domain-containing protein 1-like	-	-	4.68461e-20	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	4.68461e-20	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		4.68461e-20	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	chitin catabolic process	GO:0006032	Biological Process	4.68461e-20	80%
Blast2go	chitinase activity	GO:0004568	Molecular Function	4.68461e-20	80%
Blast2go	cation binding	GO:0043169	Molecular Function	4.68461e-20	80%
Blast2go	lysosome	GO:0005764	Cellular Component	4.68461e-20	80%
Blast2go	extracellular region	GO:0005576	Cellular Component	4.68461e-20	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Rhodanese-like	IPR001763	-	-
Sma3	Chitinase II	IPR011583	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUQ4

Fln msg: your sequence is shorter than subject: 96 - 454

Fln protein: NVINFYGNDYVLPRGGAPILGHGYLSLLRTHKPMLFWDEQNMEHYFDYEERLNMYRVFYPSLKSISLRLEEAQAWGVGLSIWEIGQGLEYFFDLL*

Protein Length: 97

Fln nts: AATGTTATAAATTTCTATGGAAATGATTATGTTCTTCCACGAGGTGGTGCACCTATCCTTGGTCATGGATACCTCTCCTTGCTTAGAACACACAAGCCAATGTTGTTTTGGGATGAGCAGAACATGGAGCATTATTTTGATTATGAGGAGCGACTGAACATGTATAGAGTCTTTTACCCTTCTTTGAAGTCAATTTCCTTGCGGCTGGAAGAAGCACAAGCATGGGGTGTTGGTTTATCAATCTGGGAGATAGGTCAAGGACTGGAATATTTCTTTGATCTGCTGTAA___TTTCTCTAAATTATCTTGTAGTAGCGGAATGAAAGTTCTCCCTAACTTATTTGAGTTCTGTCATTTGTTGTTAAATTTTACACCTAGGCAAATTAGGGGTGAGGAGCACGATCATTTGTGATGTGGACCTCCAAGGCTTGCAAATCAAGAGGTTCTGCAGTTTGTCTCAAATGACTT

Fln Alignment:

biogeco3_mira_c23620___INFYGNDYVLPRGGAPILGHGYLSLLRTHKPMLFWDEQNMEHYFDYEERLNMYRVFYPSLKSISLRLEEAQAWGVGLSIWEIGQGLEY
A9NUQ4__________________INFYGNDFVLPRGGAPILGHEYLSLLRTHKPKLFWDEQSMEHYFDYEERLNRHRVFYPSLKSISLRLEEAQTWGVGLSIWEIGQGLEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain