SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24074

Length: 223 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24074
GTTCACAATGATGCTGTAGCAGCCCTGGCAAGTGGAACGGCAGGGAAACTTCATGGTTGTGTGTTGATTGCTGGGACTGGAACAATAGCGTATGGAGCTACAGAAGATGGCAGAGAAGCCAGAGCTGACTGGTGTAGGACCAATCTTGGGTGATTGGGGCAGTGGTTATGGGATTGCTGCTCAAGCTTTAACAGCAGTAGTAAAAGCTCATGATGGACACATT

Ace file of the UniGene biog3_v1.0_unigene24074 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2636	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase [Oryza sativa Japonica Group] gb\|EAZ02771.1\| hypothetical protein OsI_24894 [Oryza sativa Indica Group] gb\|EAZ38693.1\| hypothetical protein OsJ_23091 [Oryza sativa Japonica Group]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	n-acetyl-d-glucosamine kinase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	0.0	80%
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, BadF/BadG/BcrA/BcrD type	IPR002731	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN60

Fln msg: Separated hits, possible frame ERROR between 126 and 131, Distance to subject end: 183 aas, your sequence is shorter than subject: 75 - 387

Fln protein: VHNDAVAALASGTAGKLHGCVLIAGTGTIAYGATEDGREARxxxGVGPILGDWGSGYGIAAQALTAVVKAHDGHI

Protein Length: 76

Fln nts: GTTCACAATGATGCTGTAGCAGCCCTGGCAAGTGGAACGGCAGGGAAACTTCATGGTTGTGTGTTGATTGCTGGGACTGGAACAATAGCGTATGGAGCTACAGAAGATGGCAGAGAAGCCAGAGCxxxxxxTGGTGTAGGACCAATCTTGGGTGATTGGGGCAGTGGTTATGGGATTGCTGCTCAAGCTTTAACAGCAGTAGTAAAAGCTCATGATGGACACATT

Fln Alignment:

biogeco3_mira_c23569___VHNDAVAALASGTAGKLHGCVLIAGTGTIAYGATEDGREARAxxGVGPILGDWGSGYGIAAQALTAVVKAHDG
A9NN60__________________VHNDAVAALASGTAGELHGCVLIAGTGTIAYGFTEDGREARAxxGAGPILGDWGSGYGIAAQALTAVMRAHDG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
93	33	66			0.997461
96			66	33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain