SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24069

Length: 333 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24069
AGCAACAGAAGAAGAACGCCAGAGGAGGAGAGATGCTTGCCTGGAACAAGCTAGAACCAAATTAGCAGAGGGAGATGTTAAAGGTGCTATTGAACTCTTCCAGAGAGCAGTGCATATTACACCATCCATGGCAAATGAATTGATTCAGATCCTTAAGACAGAAGGAGTTGAGTTTGTTGTTGCACCTTATGAAGCAGATGCTCAACTGGCTTACTTGTTTAGGTTGGAGCCAGAGAAAGGTGGAATAGTAGCTGTTATCAGTGAAGACAGTGATTTAATGGCATATGGCTGCAATGTGGTTATTTACAAAATGGATCGGTCTGGAGATACATT

Ace file of the UniGene biog3_v1.0_unigene24069 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59928	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exonuclease family protein n=4 Tax=Arabidopsis RepID=Q94A33_ARATH	-	-	1.0e-32	66%
FL-Next	sp=Exonuclease 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	47%
Blast2go	protein	-	-	4.29358e-42	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	4.29358e-42	74%
Blast2go	mismatch repair	GO:0006298	Biological Process	4.29358e-42	74%
Blast2go	flap endonuclease activity	GO:0048256	Molecular Function	4.29358e-42	74%
Blast2go	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity	GO:0051908	Molecular Function	4.29358e-42	74%
Blast2go	single-stranded DNA specific 5'-3' exodeoxyribonuclease activity	GO:0045145	Molecular Function	4.29358e-42	74%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.29358e-42	74%
Blast2go	protein binding	GO:0005515	Molecular Function	4.29358e-42	74%
Blast2go	nucleus	GO:0005634	Cellular Component	4.29358e-42	74%

Source	InterPros	Term	Type	Identity
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q60GC1

Fln msg: Distance to subject end: 643 aas, your sequence is shorter than subject: 110 - 836

Fln protein: ATEEERQRRRDACLEQARTKLAEGDVKGAIELFQRAVHITPSMANELIQILKTEGVEFVVAPYEADAQLAYLFRLEPEKGGIVAVISEDSDLMAYGCNVVIYKMDRSGDT

Protein Length: 111

Fln nts: AGCAACAGAAGAAGAACGCCAGAGGAGGAGAGATGCTTGCCTGGAACAAGCTAGAACCAAATTAGCAGAGGGAGATGTTAAAGGTGCTATTGAACTCTTCCAGAGAGCAGTGCATATTACACCATCCATGGCAAATGAATTGATTCAGATCCTTAAGACAGAAGGAGTTGAGTTTGTTGTTGCACCTTATGAAGCAGATGCTCAACTGGCTTACTTGTTTAGGTTGGAGCCAGAGAAAGGTGGAATAGTAGCTGTTATCAGTGAAGACAGTGATTTAATGGCATATGGCTGCAATGTGGTTATTTACAAAATGGATCGGTCTGGAGATACATT

Fln Alignment:

biogeco3_mira_c23563___EEERQRRRDACLEQARTKLAEGDVKGAIELFQRAVHITPSMANELIQILKTEGVEFVVAPYEADAQLAYLFRLEPEKGGIVAVISEDSDLMAYGCNVVIYKMDRSG
Q60GC1__________________ETKRERSRKENLERAKEHESAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFL----SVNKLVDAVITEDSDLIPFGCSRIIFKMDKFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain