SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24053

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene24053
AATGTCAATTTTCTTGTAGAAAGAGACTACACATTACTCATCTGGTTCTGAATCGATGGGGCGGACTCCACCAGGGCTGAATAGAGGGCCGTGGACGCGTGACGAGGATCTTCGCCTCAAAAATTACATCGAAGTTCACGGCGAAGGCGGGTGGAGAACTCTTCCAATTAAAGCAGGTCTGCTTCGATGCGGGAAAAGCTGCAGATTGCGTTGGATGAATTATCTTCGACCCGATGTGAAATGCGGCCACATTCTGCCCGAGGAGGAAGATTTAATCCTTAGGTTGCATCGCCTCCTTGGAAAC

Ace file of the UniGene biog3_v1.0_unigene24053

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43032	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myb-like protein P [Fagopyrum cymosum] gb\|ABP57070.1\| Myb-like protein P [Fagopyrum cymosum]	-	-	1.0e-29	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	protein	-	-	1.00931e-37	79%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Myb-related protein P, C-terminal	IPR010588	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 305 aas, your sequence is shorter than subject: 83 - 392

Fln protein: MGRTPPGLNRGPWTRDEDLRLKNYIEVHGEGGWRTLPIKAGLLRCGKSCRLRWMNYLRPDVKCGHILPEEEDLILRLHRLLGN

Protein Length: 84

Fln nts: AATGTCAATTTTCTTGTAGAAAGAGACTACACATTACTCATCTGGTTCTGAATCG_-_ATGGGGCGGACTCCACCAGGGCTGAATAGAGGGCCGTGGACGCGTGACGAGGATCTTCGCCTCAAAAATTACATCGAAGTTCACGGCGAAGGCGGGTGGAGAACTCTTCCAATTAAAGCAGGTCTGCTTCGATGCGGGAAAAGCTGCAGATTGCGTTGGATGAATTATCTTCGACCCGATGTGAAATGCGGCCACATTCTGCCCGAGGAGGAAGATTTAATCCTTAGGTTGCATCGCCTCCTTGGAAAC

Fln Alignment:

biogeco3_mira_c23542___MGRTP----PGLNRGPWTRDEDLRLKNYIEVHGEGGWRTLPIKAGLLRCGKSCRLRWMNYLRPDVKCGHILPEEEDLILRLHRLLGN
B8LMJ6__________________MGRSPCCSKEGLNRGAWTKKEDMILSEYIRIHGDGGWRNLPKKAGLKRCGKSCRLRWLNYLRPDIKRGNICPDEEELIIRLHRLLGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain