SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24041

Length: 343 nt

UniGene Fasta

>biog3_v1.0_unigene24041
CTACTCCAAGTTGTGTCCAGCGGGATAAGGTAGATGATGTAGTTCCATTGGCACTCCTAGTGGTGGGCAGGTGCCAAGTTCTTCTCAACCTGGTTTGCTAGCAGATCCACAGTCTGGAAACAATGAGCGTGCCACTCTGGACTCATTGGTTGTGCAATATTTGAAGCATCAGCATCGACAGTGCCCTGCTCCTATTACCACTCTTCCTCCATTATCTTTGTTGCATCCACATGTATGTCCTGAACCTAGCAGAGCTCTAGATGCACCTTTTAACACAGCAGGACGGTTAAGCACTCGCGAGTTTAGAACACAATATGGTGGAATGCATGGTCATAGGCGTGAT

Ace file of the UniGene biog3_v1.0_unigene24041

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2114	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: HIV-1 Vpr binding protein, partial [Bos taurus]	-	-	32%
FL-Next	sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	78%
Blast2go	leaf development	GO:0048366	Biological Process	78%
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	78%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M086

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 435 aas, your sequence is shorter than subject: 114 - 1883

Fln protein: YSKLCPAG*GR*CSSIGTPSGGQVPSSSQPGLLADPQSGNNERATLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPSRALDAPFNTAGRLSTREFRTQYGGMHGHRRD

Protein Length: 115

Fln nts: CTACTCCAAGTTGTGTCCAGCGGGATAAGGTAGATGATGTAGTTCCATTGGCACTCCTAGTGGTGGGCAGGTGCCAAGTTCTTCTCAACCTGGTTTGCTAGCAGATCCACAGTCTGGAAACAATGAGCGTGCCACTCTGGACTCATTGGTTGTGCAATATTTGAAGCATCAGCATCGACAGTGCCCTGCTCCTATTACCACTCTTCCTCCATTATCTTTGTTGCATCCACATGTATGTCCTGAACCTAGCAGAGCTCTAGATGCACCTTTTAACACAGCAGGACGGTTAAGCACTCGCGAGTTTAGAACACAATATGGTGGAATGCATGGTCATAGGCGTGAT

Fln Alignment:

biogeco3_mira_c23526___LLADPQSGNNERATLDSLVVQYLKHQHRQCPAXXXXXXXXXXXXXXVCPEPSRALDAPFNTAGRLSTREFRTQYGGMHGHRRD
Q9M086__________________LPSDPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYSGVHGNRRD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain