SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24036

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene24036
AAGGATATTATGAGCAATATGTCAAGGCACTTGATGCAACTGCTGAGAAAGCTGATCGAGCAGCACTTACCAAAGCATATCAAACTGCTGCAATCTTATTTGAAGTGCTCAAGGCGGTCAACCAGACGGATGGTGCAGAAGTTGACCCACAAATTATGGAAGCTGGAAAAGATGTCGAGAAAAAAACAGATCAGGAAATATATCGCATCAAACTTCCTGGAAGTGCTATCCTTGGTGAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene24036

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13371	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group]	-	-	72%
FL-Next	sp=Callose synthase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	callose synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	83%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	83%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	Hly-III-related	IPR004254	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SL03

Fln msg: Distance to subject end: 1752 aas, your sequence is shorter than subject: 81 - 1951

Fln protein: GYYEQYVKALDATAEKADRAALTKAYQTAAILFEVLKAVNQTDGAEVDPQIMEAGKDVEKKTDQEIYRIKLPGSAILGEGH

Protein Length: 82

Fln nts: AAGGATATTATGAGCAATATGTCAAGGCACTTGATGCAACTGCTGAGAAAGCTGATCGAGCAGCACTTACCAAAGCATATCAAACTGCTGCAATCTTATTTGAAGTGCTCAAGGCGGTCAACCAGACGGATGGTGCAGAAGTTGACCCACAAATTATGGAAGCTGGAAAAGATGTCGAGAAAAAAACAGATCAGGAAATATATCGCATCAAACTTCCTGGAAGTGCTATCCTTGGTGAAGGACATT

Fln Alignment:

biogeco3_mira_c23514___YYEQYVKALDATAEKADRAALTKAYQTAAILFEVLKAVNQTDGAEVDPQIMEAGKDVEKKT
Q9SL03__________________YYKKYIQALQNAADKADRAQLTKAYQTAAVLFEVLKAVNQTEDVEVADEILEAHTKVEEKS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain