SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23968

Length: 248 nt

UniGene Fasta

>biog3_v1.0_unigene23968
AATGTATTCTCAAAGAAGGCTGTTTCTTTTAGCCCCTTCAACACTGGACTTGATCATTCACAAAAGGCTGCTGTTTCAAAGGCTTTAAGTTCAGGCAGTGTGTTTCTGTTACATGGGCCACCTGGAACTGGAAGACCACAGCTGTGGTGGAAATAATACTGCAGGAAGTGAAGCGTGGATCCAAGGTTCTTGCGTGTGCTGCCTCTAATGTTGCTGTTGACAATATTGTGGAGAGGCTTGCCAATTAT

Ace file of the UniGene biog3_v1.0_unigene23968

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9373	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] gb\|AAK76494.1\| putative helicase [Arabidopsis thaliana] gb\|AAM15033.1\| putative helicase [Arabidopsis thaliana] gb\|AAD17447.2\| putative helicase [Arabidopsis thaliana] gb\|AAM14300.1\| putative helicase [A	-	-	73%
FL-Next	tr=DNA-binding protein smubp-2, putative; Ricinus communis (Castor bean).	-	-	76%
Blast2go	dna-binding protein smubp-2-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	87%
Blast2go	Thiamine metabolism	00730	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA helicase, putative	IPR004483	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SL55

Fln msg: Overlapping hits, possible frame ERROR between 135 and 132, Distance to subject end: 384 aas, your sequence is shorter than subject: 83 - 644

Fln protein: NVFSKKAVSFSPFNTGLDHSQKAAVSKALSSGSVFLLHGPPGTxxxTAVVEIILQEVKRGSKVLACAASNVAVDNIVERLANY

Protein Length: 84

Fln nts: AATGTATTCTCAAAGAAGGCTGTTTCTTTTAGCCCCTTCAACACTGGACTTGATCATTCACAAAAGGCTGCTGTTTCAAAGGCTTTAAGTTCAGGCAGTGTGTTTCTGTTACATGGGCCACCTGGAACTxxxxxxxxxACAGCTGTGGTGGAAATAATACTGCAGGAAGTGAAGCGTGGATCCAAGGTTCTTGCGTGTGCTGCCTCTAATGTTGCTGTTGACAATATTGTGGAGAGGCTTGCCAATTAT

Fln Alignment:

biogeco3_mira_c23418___SKKAVSFSPFNTGLDHSQKAAVSKALSSGSVFLLHGPPGTGxTTAVVEIILQEVKRGSKVLACAASNVAVDNIVERL
B9SL55__________________SKKGVTFTPFNSNLDHSQKDAISKALSSKDVFLLHGPPGTGxTTTVVEIILQEVKRGAKILACAASNIAVDNIVERL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain